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	Title	Author(s)	Issue Date
	A multi-task convolutional deep neural network for variant calling in single molecule sequencing Journal:Nature Communications	Luo, R Sedlazeck, FJ Lam, TW Schatz, MC	2019
	On-line stream merging with max span and min coverage Journal:Theory of Computing Systems	Chan, WT Lam, TW Ting, HF Wong, PWH	2005
	An efficient algorithm for optimizing whole genome alignment with noise Journal:Bioinformatics	Wong, PWH Lam, TW Lu, N Ting, HF Yiu, SM	2004
	The mutated subsequence problem and locating conserved genes Journal:Bioinformatics	Chan, HL Lam, TW Sung, WK Wong, PWH Yiu, SM Fan, X	2005
	RENET2: high-performance full-text gene–disease relation extraction with iterative training data expansion Journal:NAR Genomics and Bioinformatics	SU, J WU, Y Ting, HF Lam, TW Luo, R	2021
	Skyhawk: an artificial neural network-based discriminator for reviewing clinically significant genomic variants Journal:International Journal of Computational Biology and Drug Design	Luo, R Lam, TW Schatz, MC	2021
	MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data Journal:BMC Genomics	Leung, CM LI, D Xin, Y Law, WC Zhang, Y Ting, HF Luo, R Lam, TW	2020
	Assemblathon 2: Evaluating de novo methods of genome assembly in three vertebrate species Journal:GigaScience	Bradnam, Keith R.Fass, Joseph N.Alexandrov, Anton Baranay, Paul Bechner, Michael Birol, InanÃ§Boisvert, SÃ©bastien Chapman, Jarrod A.Chapuis, Guillaume Chikhi, Rayan Chitsaz, Hamidreza Chou, Wen Chi Corbeil, Jacques Fabbro, Cristian Del Docking, Roderick R.Durbin, Richard Earl, Dent Emrich, Scott Fedotov, Pavel Fonseca, Nuno A.Ganapathy, Ganeshkumar Gibbs, Richard A.Gnerre, Sante Godzaridis, Ã lÃ©nie Goldstein, Steve Haimel, Matthias Hall, Giles Haussler, David Hiatt, Joseph B.Ho, Isaac Y.Howard, Jason Hunt, Martin Jackman, Shaun D.Jaffe, David B.Jarvis, Erich D.Jiang, Huaiyang Kazakov, Sergey Kersey, Paul J.Kitzman, Jacob O.Knight, James R.Koren, Sergey Lam, Tak Wah Lavenier, Dominique Laviolette, FranÃ§ois Li, Yingrui Li, Zhenyu Liu, Binghang Liu, Yue Luo, Ruibang MacCallum, Iain MacManes, Matthew D.Maillet, Nicolas Melnikov, Sergey Naquin, Delphine Ning, Zemin Otto, Thomas D.Paten, Benedict Paulo, OctÃ¡vio S.Phillippy, Adam M.Pina-Martins, Francisco Place, Michael Przybylski, Dariusz Qin, Xiang Qu, Carson Ribeiro, Filipe J.Richards, Stephen Rokhsar, Daniel S.Ruby, J. Graham Scalabrin, Simone Schatz, Michael C.Schwartz, David C.Sergushichev, Alexey Sharpe, Ted Shaw, Timothy I.Shendure, Jay Shi, Yujian Simpson, Jared T.Song, Henry Tsarev, Fedor Vezzi, Francesco Vicedomini, Riccardo Vieira, Bruno M.	2013
	Potential utility of metagenomic sequencing for improving etiologic diagnosis of infective endocarditis Journal:Future Cardiology	Chan, WS Au, CH Leung, HCM Ho, DN LI, D Chan, TL Lam, TW Ma, ESK Tang, BSF	2019
	Identification of Cooperative Gene Regulation Among Transcription Factors, LncRNAs, and MicroRNAs in Diabetic Nephropathy Progression Journal:Frontiers in Genetics	Chen, L Wu, B Wang, S Xiong, Y Zhou, B Cheng, X Zhou, T Luo, R Lam, TW Yan, B Chen, J	2020
	Rapid and economical drug resistance profiling with Nanopore MinION for clinical specimens with low bacillary burden of Mycobacterium tuberculosis Journal:BMC Research Notes	Chan, WS Au, CH Chung, Y Leung, HCM Ho, DN Wong, EYL Lam, TW Chan, TL Ma, ESK Tang, BSF	2020
	CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning Journal:iScience	Zhang, Y Liu, CM Leung, HCM Luo, R Lam, TW	2020
	SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads Journal:Bioinformatics	Xie, Yinlong Wu, Gengxiong Tang, Jingbo Luo, Ruibang Patterson, Jordan Liu, Shanlin Huang, Weihua He, Guangzhu Gu, Shengchang Li, Shengkang Zhou, Xin Lam, Tak Wah Li, Yingrui Xu, Xun Wong, Gane Ka Shu Wang, Jun	2014
	Erratum to "SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler" [GigaScience, (2012), 1, 18] Journal:GigaScience	Luo, Ruibang Liu, Binghang Xie, Yinlong Li, Zhenyu Huang, Weihua Yuan, Jianying He, Guangzhu Chen, Yanxiang Pan, Qi Liu, Yunjie Tang, Jingbo Wu, Gengxiong Zhang, Hao Shi, Yujian Liu, Yong Yu, Chang Wang, Bo Lu, Yao Han, Changlei Cheung, David W.Yiu, Siu Ming Peng, Shaoliang Xiaoqian, Zhu Liu, Guangming Liao, Xiangke Li, Yingrui Yang, Huanming Wang, Jian Lam, Tak Wah Wang, Jun	2015
	Serine peptidase inhibitor Kazal type 1 (SPINK1) as novel downstream effector of the cadherin-17/β-catenin axis in hepatocellular carcinoma Journal:Cellular Oncology	SHEK, HP Luo, R Lam, BYH Sung, WK Lam, TW Luk, JMC Leung, MS Chan, KT Wang, KSH Chan, CMG Poon, RTP Lee, NPY	2017
	PnpProbs: A better multiple sequence alignment tool by better handling of guide trees Journal:BMC Bioinformatics	YE, Y Lam, TW Ting, HF	2016
	BASE: a practical de novo assembler for large genomes using long NGS reads Journal:BMC Genomics	LIU, B LIU, CM LI, D LI, Y Ting, HF Yiu, SM LUO, R Lam, TW	2016
	A simple and economical method for improving whole genome alignment Journal:BMC Genomics	MAI, H Lam, TW Ting, HF	2017
	Dictionary Matching with a Bounded Gap in Pattern or in Text Journal:Algorithmica	Hon, WK Lam, TW Shah, R Thankachan, S Yang, Y	2018
	SOAP3: ultra-fast GPU-based parallel alignment tool for short reads Journal:Bioinformatics	Liu, CM Wong, T Wu, E Luo, R Yiu, SM Li, Y Wang, B Yu, C Chu, X Zhao, K Li, R Lam, TW	2012
	SOAPsplice: genome-wide ab initio detection of splice junctions from RNA-seq data Journal:Frontiers in Genomic Assay Technology	Huang, S Zhang, J Li, R Zhang, W He, Z Lam, TW Peng, Z Yiu, SM	2011
	An Efficient Alignment Algorithm for Searching Simple Pseudoknots over Long Genomic Sequence Journal:IEEE/ACM Transactions on Computational Biology and Bioinformatics	Ma, CCC Wong, KF Lam, TW Hon, W Sadakane, K Yiu, SM	2012
	COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly Journal:Bioinformatics	Liu, B Yuan, J Yiu, SM Li, Z Xie, Y Chen, Y Shi, Y Zhang, H Li, Y Lam, TW Luo, R	2012
	SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler Journal:GigaScience	Luo, R Liu, B Xie, Y Li, Z Huang, W Yuan, J He, G Chen, Y Pan, Q Liu, Y Tang, J Wu, G Zhang, H Shi, Y Liu, Y Yu, C Wang, B Lu, Y Han, C Cheung, DWL Yiu, SM Peng, S Zhu, X Liu, G Liao, X Li, Y Yang, H Wang, J Lam, TW Wang, J	2012
	Scheduling for weighted flow time and energy with rejection penalty Journal:Theoretical Computer Science	CHAN, SH Lam, TW Lee, LK	2013