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	Title	Author(s)	Issue Date
	Comparison of somatic variant detection algorithms using Ion Torrent targeted deep sequencing data Proceeding/Conference:BMC Medical Genomics	Wang, Q Kotoula, V Hsu, P-C Papadopoulou, K Ho, JWK Fountzilas, G Giannoulatou, E	2019
	Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco Journal:BMC Genomics	Yang, A Kishore, A Phipps, B Ho, JWK	2019
	Cellular diversity and lineage trajectory: insights from mouse single cell transcriptomes Journal:Development (Cambridge)	Tam, PPL Ho, JWK	2020
	PARC: ultrafast and accurate clustering of phenotypic data of millions of single cells Journal:Bioinformatics	Stassen, SV SIU, DMD LEE, KCM Ho, JWK So, HKH Tsia, KK	2020
	A Wnt-Bmp feedback circuit controls intertissue signaling dynamics in tooth organogenesis Journal:Science Signaling	O'Connell, Daniel J.Ho, Joshua W.K.Mammoto, Tadanori Turbe-Doan, Annick O'Connell, Joyce T.Haseley, Psalm S.Koo, Samuel Kamiya, Nobuhiro Ingber, Donald E.Park, Peter J.Maas, Richard L.	2012
	Computed tomography-based deep-learning prediction of neoadjuvant chemoradiotherapy treatment response in esophageal squamous cell carcinoma Journal:Radiotherapy & Oncology	Hu, Y XIE, C Yang, H Ho, JWK Wen, J Han, L Lam, KO Wong, IYH Law, SYK Chiu, KWH Vardhanabhuti, V Fu, J	2021
	FlowGrid enables fast clustering of very large single-cell RNA-seq data Journal:Bioinformatics	Fang, X Ho, JWK	2022
	Biophysical Review’s ‘meet the editors series’—a profile of Joshua W. K. Ho Journal:Biophysical Reviews	Ho, JWK	2020
	Big data: the elements of good questions, open data, and powerful software Journal:Biophysical Reviews	Ho, JWK Giannoulatou, E	2019
	CardiacProfileR: an R package for extraction and visualisation of heart rate profiles from wearable fitness trackers Journal:Biophysical Reviews	Djordjevic, D Cawood, BK Rispin, SK Shah, A Yim, LHH Hayward, CS Ho, JWK	2019
	Ultrafast clustering of single-cell flow cytometry data using FlowGrid Proceeding/Conference:BMC Systems Biology	Ye, X Ho, JWK	2019
	Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury Journal:eLife	Farbehi, N Patrick, R Dorison, A Xaymardan, M Janbandhu, V Wystub-Lis, K Ho, JWK Nordon, RE Harvey, RP	2019
	Expression Clustering Book:Encyclopedia of Bioinformatics and Computational Biology	Ye, X Ho, JWK	2019
	Classroom Activities for Teaching Artificial Intelligence to Primary School Students Proceeding/Conference:International Conference on Computational Thinking Education 2019 Conference Proceedings	Ho, JWK Scadding, M	2019
	‘Non-self’ Mutation: Double-stranded RNA elicits antiviral pathogenic response in a Drosophila model of expanded CAG repeat neurodegenerative diseases Journal:Human Molecular Genetics	van Eyk, CL Samaraweera, SE Scott, A Webber, DL Harvey, DP Mecinger, O O’Keefe, LV Cropley, JE Young, P Ho, J Suter, C Richards, RI	2019
	Dam mutants provide improved sensitivity and spatial resolution for profiling transcription factor binding Journal:Epigenetics & Chromatin	Szczesnik, T Ho, JWK Sherwood, R	2019
	Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus Journal:Computational Biology and Chemistry	Djordjevic, D Tang, JYS Chen, YX Kwan, SLS Ling, RWK Qian, G Woo, CYY Ellis, SJ Ho, JWK	2019
	Enhanced cardiac repair by telomerase reverse transcriptase over-expression in human cardiac mesenchymal stromal cells Journal:Scientific Reports	Le, TYL Pickett, HA Yang, A Ho, JWK Thavapalachandran, S Igoor, S Yang, SF Farraha, M Voges, HK Hudson, JE dos Remedios, CG Bryan, TM Kizana, E Chong, JJH	2019
	Ularcirc: visualization and enhanced analysis of circular RNAs via back and canonical forward splicing Journal:Nucleic Acids Research	Humphreys, DT Fossat, N Demuth, M Tam, PPL Ho, JWK	2019
	Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads Journal:F1000Research	Yang, A Tang, JYS Troup, M Ho, JWK	2019
	MiSFiT: Modelling of mitochondrial heteroplasmy for clonal substructure in single cell sequencing data Proceeding/Conference:25th Research Postgraduate Symposium (RPS), Li Ka Shing Faculty of Medicine, The University of Hong Kong	Kwok, AWC Sham, MH Huang, Y Ho, JWK	2020
	AI in Genomics: scalability and validity Proceeding/Conference:Medicine Meets AI 2019: East Meets West, Hong Kong Science and Technology Park	Ho, JWK	2019
	Single-cell RNA-seq analysis Proceeding/Conference:Winter School in Mathematical and Computational Biology 2019, University of Queensland, Australia	Ho, JWK	2019
	Evaluation of experimental protocols for shotgun whole-genome metagenomic discovery of antibiotic resistance genes Journal:IEEE/ACM Transactions on Computational Biology and Bioinformatics	Yu, KHO Fang, X Yao, H Ng, B Leung, TK Wang, LL Lin, CH Chan, A Leung, WK Leung, SY Ho, J	2020
	Sierra: discovery of differential transcript usage from polyA-captured single-cell RNA-seq data Journal:Genome Biology	Patrick, R Humphreys, DT Janbandhu, V Oshlack, A Ho, JWK Harvey, RP Lo, KK	2020