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Title	Author(s)	Issue Date
Absolute quantification and genome-centric analyses elucidate the dynamics of microbial populations in anaerobic digesters Journal:Water Research	Wang, Chunxiao Yang, Yu Wang, Yulin Wang, Dou Xu, Xiaoqing Wang, Yubo Li, Liguan Yang, Chao Zhang, Tong	2022
Antibiotic resistance genes in anaerobic digestion: Unresolved challenges and potential solutions Journal:Bioresource Technology	Wang, Chunxiao Yin, Xiaole Xu, Xiaoqing Wang, Dou Wang, Yubo Zhang, Tong	1-Mar-2025
Challenges for enrichment analysis of AMR gene-bearing plasmids Journal:Proceedings of the National Academy of Sciences of the United States of America	Che, You Yang, Yu Xu, Xiaoqing Brinda, Karel Polz, Martin F.Hanage, William P.Zhang, Tong	2021
Combinatorial metabolic engineering of Pseudomonas putida KT2440 for efficient mineralization of 1,2,3-trichloropropane Journal:Scientific Reports	Gong, Ting Xu, Xiaoqing Che, You Liu, Ruihua Gao, Weixia Zhao, Fengjie Yu, Huilei Liang, Jingnan Xu, Ping Song, Cunjiang Yang, Chao	2017
Complementary bioinformatics and experimental approaches to investigate the transfer ofamrgenes Journal:Proceedings of the National Academy of Sciences of the United States of America	Che, You Yang, Yu Xu, Xiaoqing Břinda, Karel Polz, Martin F.Hanage, William P.Zhang, Tong	2021
Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes Journal:Proceedings of the National Academy of Sciences of the United States of America	Che, You Yang, Yu Xu, Xiaoqing Brinda, Karel Polz, Martin F.Hanage, William P.Zhang, Tong	2021
Development and application of influenza virus wastewater surveillance in Hong Kong Journal:Water Research	Zheng, Xiawan Zhao, Keyue Xu, Xiaoqing Deng, Yu Leung, Kathy Wu, Joseph T Leung, Gabriel M Peiris, Malik Poon, Leo LM Zhang, Tong	15-Oct-2023
Distributions, interactions, and dynamics of prokaryotes and phages in a hybrid biological wastewater treatment system Journal:Microbiome	Wang, Dou Liu, Lei Xu, Xiaoqing Wang, Chunxiao Wang, Yulin Deng, Yu Zhang, Tong	22-Jul-2024
Ecological connectivity of genomic markers of antimicrobial resistance in Escherichia coli in Hong Kong Journal:Nature Communications	Xu, Xiaoqing Lin, Yunqi Deng, Yu Liu, Lei Wang, Dou Tang, Qinling Wang, Chunxiao Chen, Xi Che, You Wyrsch, Ethan R.Jarocki, Veronica M.Djordjevic, Steven P.Zhang, Tong	8-Aug-2025
Engineering Pseudomonas putida KT2440 for simultaneous degradation of carbofuran and chlorpyrifos Journal:Microbial Biotechnology	Gong, Ting Liu, Ruihua Che, You Xu, Xiaoqing Zhao, Fengjie Yu, Huilei Song, Cunjiang Liu, Yanping Yang, Chao	2016
High-resolution and real-time wastewater viral surveillance by Nanopore sequencing Journal:Water Research	Xu, Xiaoqing Deng, Yu Ding, Jiahui Tang, Qinling Lin, Yunqi Zheng, Xiawan Zhang, Tong	1-Jun-2024
High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria Journal:Microbiome	Che, You Xu, Xiaoqing Yang, Yu Břinda, Karel Hanage, William Yang, Chao Zhang, Tong	2022
Microbial risk assessment across multiple environments based on metagenomic absolute quantification with cellular internal standards Journal:Nature Water	Shi, Xianghui Yang, Yu Wang, Chunxiao Xu, Xiaoqing Mao, Xuemei Chen, Xi Ding, Jiahui Li, Shuxian Zhang, Tong	22-Apr-2025
Niche differentiation and symbiotic association among ammonia/nitrite oxidizers in a full-scale rotating biological contactor Journal:Water Research	Wang, Dou Wang, Yulin Liu, Lei Chen, Yiqiang Wang, Chunxiao Xu, Xiaoqing Yang, Yu Wang, Yubo Zhang, Tong	2022
Rapid and effective detection of SARS-CoV-2 virus and new mutants to enhance wastewater surveillance	Xu, Xiaoqing 徐晓慶 Advisor(s):Zhang, T	2023
Refining detection methods for emerging SARS-CoV-2 mutants in wastewater: A case study on the Omicron variants Journal:Science of the Total Environment	Xu, Xiaoqing Deng, Yu Ding, Jiahui Shi, Xianghui Zheng, Xiawan Wang, Dou Yang, Yu Liu, Lei Wang, Chunxiao Li, Shuxian Gu, Haogao Poon, Leo L.M.Zhang, Tong	2023
Species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping with Argo Journal:Nature Communications	Chen, Xi Yin, Xiaole Xu, Xiaoqing Zhang, Tong	18-Feb-2025
Standardization in global environmental antibiotic resistance genes (ARGs) surveillance Journal:Critical Reviews in Environmental Science and Technology	Mao, Xuemei Yin, Xiaole Yang, Yu Che, You Xu, Xiaoqing Deng, Yu Li, Liguan Zhang, Tong	2024
The quest for environmental analytical microbiology: absolute quantitative microbiome using cellular internal standards Journal:Microbiome	Wang, Chunxiao Yang, Yu Xu, Xiaoqing Wang, Dou Shi, Xianghui Liu, Lei Deng, Yu Li, Liguan Zhang, Tong	27-Jan-2025
Tracking diarrhea viruses and mpox virus using the wastewater surveillance network in Hong Kong Journal:Water Research	Zheng, Xiawan Zhao, Keyue Xue, Bingjie Deng, Yu Xu, Xiaoqing Yan, Weifu Rong, Chao Leung, Kathy Wu, Joseph T Leung, Gabriel M Peiris, Malik Poon, Leo LM Zhang, Tong	15-May-2024

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