File Download

There are no files associated with this item.

  Links for fulltext
     (May Require Subscription)
Supplementary

Article: Genome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae)

TitleGenome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae)
Authors
KeywordsEcology
Evolutionary Biology
Subjects Genetics and Genomics
Issue Date25-Apr-2024
PublisherGigaScience Press
Citation
Gigabyte, 2024, v. 2024 How to Cite?
AbstractThe edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae) is wood-decaying and can be commonly found worldwide. It has found application in food additives, given its ability to synthesize long-chain glycolipids, among other uses. In this study, we present the genome assembly of D. spathularia using a combination of PacBio HiFi reads and Omni-C data. The genome size is 29.2 Mb. It has high sequence contiguity and completeness, with a scaffold N50 of 1.925 Mb and a 92.0% BUSCO score. A total of 11,510 protein-coding genes and 474.7 kb repeats (accounting for 1.62% of the genome) were predicted. The D. spathularia genome assembly generated in this study provides a valuable resource for understanding their ecology, such as their wood-decaying capability, their evolutionary relationships with other fungi, and their unique biology and applications in the food industry.
Persistent Identifierhttp://hdl.handle.net/10722/347343

 

DC FieldValueLanguage
dc.contributor.authorHui, Jerome HL-
dc.contributor.authorChan, Ting Fung-
dc.contributor.authorChan, Leo Lai-
dc.contributor.authorCheung, Siu Gin-
dc.contributor.authorCheang, Chi Chiu-
dc.contributor.authorFang, James Kar Hei-
dc.contributor.authorGaitan-Espitia, Juan Diego-
dc.contributor.authorLau, Stanley Chun Kwan-
dc.contributor.authorHeiSung, Yik-
dc.contributor.authorWong, Chris Kong Chu-
dc.contributor.authorYip, Kevin Yuk Lap-
dc.contributor.authorWei, Yingying-
dc.contributor.authorChong, Tze Kiu-
dc.contributor.authorLaw, Sean Tsz Sum-
dc.contributor.authorNong, Wenyan-
dc.contributor.authorYip, Ho Yin-
dc.date.accessioned2024-09-21T00:31:11Z-
dc.date.available2024-09-21T00:31:11Z-
dc.date.issued2024-04-25-
dc.identifier.citationGigabyte, 2024, v. 2024-
dc.identifier.urihttp://hdl.handle.net/10722/347343-
dc.description.abstractThe edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae) is wood-decaying and can be commonly found worldwide. It has found application in food additives, given its ability to synthesize long-chain glycolipids, among other uses. In this study, we present the genome assembly of D. spathularia using a combination of PacBio HiFi reads and Omni-C data. The genome size is 29.2 Mb. It has high sequence contiguity and completeness, with a scaffold N50 of 1.925 Mb and a 92.0% BUSCO score. A total of 11,510 protein-coding genes and 474.7 kb repeats (accounting for 1.62% of the genome) were predicted. The D. spathularia genome assembly generated in this study provides a valuable resource for understanding their ecology, such as their wood-decaying capability, their evolutionary relationships with other fungi, and their unique biology and applications in the food industry.-
dc.languageeng-
dc.publisherGigaScience Press-
dc.relation.ispartofGigabyte-
dc.rightsThis work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.-
dc.subjectEcology-
dc.subjectEvolutionary Biology-
dc.subjectSubjects Genetics and Genomics-
dc.titleGenome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae)-
dc.typeArticle-
dc.identifier.doi10.46471/gigabyte.120-
dc.identifier.scopuseid_2-s2.0-85193683848-
dc.identifier.volume2024-
dc.identifier.eissn2709-4715-
dc.identifier.issnl2709-4715-

Export via OAI-PMH Interface in XML Formats


OR


Export to Other Non-XML Formats