File Download

There are no files associated with this item.

  Links for fulltext
     (May Require Subscription)
Supplementary

Article: Model Generalizability Investigation for GFCE-MRI Synthesis in NPC Radiotherapy Using Multi-Institutional Patient-Based Data Normalization

TitleModel Generalizability Investigation for GFCE-MRI Synthesis in NPC Radiotherapy Using Multi-Institutional Patient-Based Data Normalization
Authors
KeywordsContrast enhanced MRI
data normalization
nasopharyngeal carcinoma
Issue Date1-Jan-2024
PublisherInstitute of Electrical and Electronics Engineers
Citation
IEEE Journal of Biomedical and Health Informatics, 2024, v. 28, n. 1, p. 100-109 How to Cite?
Abstract

Recently, deep learning has been demonstrated to be feasible in eliminating the use of gadoliniumbased contrast agents (GBCAs) through synthesizing gadolinium-free contrast-enhanced MRI (GFCE-MRI) from contrast-free MRI sequences, providing the community with an alternative to get rid of GBCAs-associated safety issues in patients. Nevertheless, generalizability assessment of the GFCE-MRI model has been largely challenged by the high inter-institutional heterogeneity of MRI data, on top of the scarcity of multi-institutional data itself. Although various data normalization methods have been adopted to address the heterogeneity issue, it has been limited to single-institutional investigation and there is no standard normalization approach presently. In this study, we aimed at investigating generalizability of GFCE-MRI model using data from seven institutions by manipulating heterogeneity of MRI data under five popular normalization approaches. Three state-of-the-art neural networks were applied to map from T1-weighted and T2-weighted MRI to contrast-enhanced MRI (CE-MRI) for GFCE-MRI synthesis in patients with nasopharyngeal carcinoma. MRI data from three institutions were used separately to generate three uni-institution models and jointly for a tri-institution model. The five normalization methods were applied to normalize the data of each model. MRI data from the remaining four institutions served as external cohorts for model generalizability assessment. Quality of GFCE-MRI was quantitatively evaluated against ground-truth CE-MRI using mean absolute error (MAE) and peak signal-to-noise ratio(PSNR). Results showed that performance of all uni-institution models remarkably dropped on the external cohorts. By contrast, model trained using multi-institutional data with Z-Score normalization yielded the best model generalizability improvement.


Persistent Identifierhttp://hdl.handle.net/10722/346152
ISSN
2023 Impact Factor: 6.7
2023 SCImago Journal Rankings: 1.964

 

DC FieldValueLanguage
dc.contributor.authorLi, Wen-
dc.contributor.authorLam, Saikit-
dc.contributor.authorWang, Yinghui-
dc.contributor.authorLiu, Chenyang-
dc.contributor.authorLi, Tian-
dc.contributor.authorKleesiek, Jens-
dc.contributor.authorCheung, Andy Lai Yin-
dc.contributor.authorSun, Ying-
dc.contributor.authorLee, Francis Kar Ho-
dc.contributor.authorAu, Kwok Hung-
dc.contributor.authorLee, Victor Ho Fun-
dc.contributor.authorCai, Jing-
dc.date.accessioned2024-09-12T00:30:32Z-
dc.date.available2024-09-12T00:30:32Z-
dc.date.issued2024-01-01-
dc.identifier.citationIEEE Journal of Biomedical and Health Informatics, 2024, v. 28, n. 1, p. 100-109-
dc.identifier.issn2168-2194-
dc.identifier.urihttp://hdl.handle.net/10722/346152-
dc.description.abstract<p>Recently, deep learning has been demonstrated to be feasible in eliminating the use of gadoliniumbased contrast agents (GBCAs) through synthesizing gadolinium-free contrast-enhanced MRI (GFCE-MRI) from contrast-free MRI sequences, providing the community with an alternative to get rid of GBCAs-associated safety issues in patients. Nevertheless, generalizability assessment of the GFCE-MRI model has been largely challenged by the high inter-institutional heterogeneity of MRI data, on top of the scarcity of multi-institutional data itself. Although various data normalization methods have been adopted to address the heterogeneity issue, it has been limited to single-institutional investigation and there is no standard normalization approach presently. In this study, we aimed at investigating generalizability of GFCE-MRI model using data from seven institutions by manipulating heterogeneity of MRI data under five popular normalization approaches. Three state-of-the-art neural networks were applied to map from T1-weighted and T2-weighted MRI to contrast-enhanced MRI (CE-MRI) for GFCE-MRI synthesis in patients with nasopharyngeal carcinoma. MRI data from three institutions were used separately to generate three uni-institution models and jointly for a tri-institution model. The five normalization methods were applied to normalize the data of each model. MRI data from the remaining four institutions served as external cohorts for model generalizability assessment. Quality of GFCE-MRI was quantitatively evaluated against ground-truth CE-MRI using mean absolute error (MAE) and peak signal-to-noise ratio(PSNR). Results showed that performance of all uni-institution models remarkably dropped on the external cohorts. By contrast, model trained using multi-institutional data with Z-Score normalization yielded the best model generalizability improvement.</p>-
dc.languageeng-
dc.publisherInstitute of Electrical and Electronics Engineers-
dc.relation.ispartofIEEE Journal of Biomedical and Health Informatics-
dc.rightsThis work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.-
dc.subjectContrast enhanced MRI-
dc.subjectdata normalization-
dc.subjectnasopharyngeal carcinoma-
dc.titleModel Generalizability Investigation for GFCE-MRI Synthesis in NPC Radiotherapy Using Multi-Institutional Patient-Based Data Normalization-
dc.typeArticle-
dc.identifier.doi10.1109/JBHI.2023.3308529-
dc.identifier.pmid37624724-
dc.identifier.scopuseid_2-s2.0-85168667492-
dc.identifier.volume28-
dc.identifier.issue1-
dc.identifier.spage100-
dc.identifier.epage109-
dc.identifier.eissn2168-2208-
dc.identifier.issnl2168-2194-

Export via OAI-PMH Interface in XML Formats


OR


Export to Other Non-XML Formats