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Article: A Prognostic Nomogram for Predicting Overall Survival in Pediatric Wilms Tumor Based on an Autophagy-related Gene Signature
Title | A Prognostic Nomogram for Predicting Overall Survival in Pediatric Wilms Tumor Based on an Autophagy-related Gene Signature |
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Authors | |
Keywords | Autophagy Gene signature Nomogram Prognostic model TCGA Wilms tumor |
Issue Date | 26-Aug-2021 |
Publisher | Bentham Science Publishers |
Citation | Combinatorial Chemistry & High Throughput Screening, 2022, v. 25, n. 8, p. 1385-1397 How to Cite? |
Abstract | Background: Wilms Tumor (WT) is the most common primary renal malignancy in children. Autophagy plays dual roles in the promotion and suppression of various cancers. Objective: The goal of our study was to develop a novel autophagy-related gene (ARG) prognostic nomogram for WT. Methods: The Cancer Genome Atlas (TCGA) database was used. We screened the expression profiles of ARGs in 136 WT patients. The differentially expressed prognostic ARGs were evaluated by multivariate Cox regression analysis and survival analysis. A novel prognostic nomogram based on the ARGs and clinical characteristics was established using multivariate Cox regression analysis. Results: First, 69 differentially expressed ARGs were identified in WT patients. Then, multivariate Cox regression analysis was used to determine 4 key prognostic ARGs (CC3CL1, ERBB2, HIF-α and CXCR4) in WT. According to their ARG expression levels, the patients were clustered into high- and low-risk groups. Next, survival analysis indicated that high-risk patients had significantly poorer overall survival than low-risk patients. The results of functional enrichment analysis suggested that autophagy may play a tumor-suppressive role in the initiation of WT. Finally, a prognostic nomogram with a Harrell's concordance index (C-index) of 0.841 was used to predict the survival probability of WT patients by integrating clinical characteristics and the 4-ARG signature. The calibration curve indicated its excellent predictive performance. Conclusion: In summary, the ARG signature could be a promising biomarker for monitoring the outcomes of WT. We established a novel nomogram based on the ARG signature, which accurately predicts the overall survival of WT patients. |
Persistent Identifier | http://hdl.handle.net/10722/337915 |
ISSN | 2023 Impact Factor: 1.6 2023 SCImago Journal Rankings: 0.301 |
ISI Accession Number ID |
DC Field | Value | Language |
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dc.contributor.author | He, LK | - |
dc.contributor.author | Wang, XT | - |
dc.contributor.author | Jin, Y | - |
dc.contributor.author | Xu, WP | - |
dc.contributor.author | Lyu, J | - |
dc.contributor.author | Guan, Y | - |
dc.contributor.author | Wu, JC | - |
dc.contributor.author | Han, SS | - |
dc.contributor.author | Liu, GS | - |
dc.date.accessioned | 2024-03-11T10:24:53Z | - |
dc.date.available | 2024-03-11T10:24:53Z | - |
dc.date.issued | 2021-08-26 | - |
dc.identifier.citation | Combinatorial Chemistry & High Throughput Screening, 2022, v. 25, n. 8, p. 1385-1397 | - |
dc.identifier.issn | 1386-2073 | - |
dc.identifier.uri | http://hdl.handle.net/10722/337915 | - |
dc.description.abstract | <p><strong>Background: </strong>Wilms Tumor (WT) is the most common primary renal malignancy in children. Autophagy plays dual roles in the promotion and suppression of various cancers.</p><p><strong>Objective: </strong>The goal of our study was to develop a novel autophagy-related gene (ARG) prognostic nomogram for WT.</p><p><strong>Methods: </strong>The Cancer Genome Atlas (TCGA) database was used. We screened the expression profiles of ARGs in 136 WT patients. The differentially expressed prognostic ARGs were evaluated by multivariate Cox regression analysis and survival analysis. A novel prognostic nomogram based on the ARGs and clinical characteristics was established using multivariate Cox regression analysis.</p><p><strong>Results: </strong>First, 69 differentially expressed ARGs were identified in WT patients. Then, multivariate Cox regression analysis was used to determine 4 key prognostic ARGs (CC3CL1, ERBB2, HIF-α and CXCR4) in WT. According to their ARG expression levels, the patients were clustered into high- and low-risk groups. Next, survival analysis indicated that high-risk patients had significantly poorer overall survival than low-risk patients. The results of functional enrichment analysis suggested that autophagy may play a tumor-suppressive role in the initiation of WT. Finally, a prognostic nomogram with a Harrell's concordance index (C-index) of 0.841 was used to predict the survival probability of WT patients by integrating clinical characteristics and the 4-ARG signature. The calibration curve indicated its excellent predictive performance.</p><p><strong>Conclusion: </strong>In summary, the ARG signature could be a promising biomarker for monitoring the outcomes of WT. We established a novel nomogram based on the ARG signature, which accurately predicts the overall survival of WT patients.</p> | - |
dc.language | eng | - |
dc.publisher | Bentham Science Publishers | - |
dc.relation.ispartof | Combinatorial Chemistry & High Throughput Screening | - |
dc.rights | This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. | - |
dc.subject | Autophagy | - |
dc.subject | Gene signature | - |
dc.subject | Nomogram | - |
dc.subject | Prognostic model | - |
dc.subject | TCGA | - |
dc.subject | Wilms tumor | - |
dc.title | A Prognostic Nomogram for Predicting Overall Survival in Pediatric Wilms Tumor Based on an Autophagy-related Gene Signature | - |
dc.type | Article | - |
dc.identifier.doi | 10.2174/1386207324666210826143727 | - |
dc.identifier.scopus | eid_2-s2.0-85130153156 | - |
dc.identifier.volume | 25 | - |
dc.identifier.issue | 8 | - |
dc.identifier.spage | 1385 | - |
dc.identifier.epage | 1397 | - |
dc.identifier.eissn | 1875-5402 | - |
dc.identifier.isi | WOS:000836803900016 | - |
dc.identifier.issnl | 1386-2073 | - |