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- Publisher Website: 10.1111/tbed.12883
- Scopus: eid_2-s2.0-85046095864
- PMID: 29691995
- WOS: WOS:000445742800025
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Article: Phylogeography of H5N1 avian influenza virus in Indonesia
Title | Phylogeography of H5N1 avian influenza virus in Indonesia |
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Authors | |
Keywords | H5N1 Subtype Indonesia Influenza A Virus One Health Phylogeography |
Issue Date | 2018 |
Citation | Transboundary and Emerging Diseases, 2018, v. 65, n. 5, p. 1339-1347 How to Cite? |
Abstract | Highly pathogenic avian influenza (HPAI) viruses of the H5N1 subtype are a major concern to human and animal health in Indonesia. This study aimed to characterize transmission dynamics of H5N1 over time using novel Bayesian phylogeography methods to identify factors which have influenced the spread of H5N1 in Indonesia. We used publicly available hemagglutinin sequence data sampled between 2003 and 2016 to model ancestral state reconstruction of HPAI H5N1 evolution. We found strong support for H5N1 transmission routes between provinces in Java Island and inter-island transmissions, such as between Nusa Tenggara and Kalimantan Islands, not previously described. The spread is consistent with wild bird flyways and poultry trading routes. H5N1 migration was associated with the regions of high chicken densities and low human development indices. These results can be used to inform more targeted planning of H5N1 control and prevention activities in Indonesia. |
Persistent Identifier | http://hdl.handle.net/10722/325386 |
ISSN | 2023 Impact Factor: 3.5 2023 SCImago Journal Rankings: 0.921 |
ISI Accession Number ID |
DC Field | Value | Language |
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dc.contributor.author | Njoto, E. N. | - |
dc.contributor.author | Scotch, M. | - |
dc.contributor.author | Bui, C. M. | - |
dc.contributor.author | Adam, D. C. | - |
dc.contributor.author | Chughtai, A. A. | - |
dc.contributor.author | MacIntyre, C. R. | - |
dc.date.accessioned | 2023-02-27T07:32:26Z | - |
dc.date.available | 2023-02-27T07:32:26Z | - |
dc.date.issued | 2018 | - |
dc.identifier.citation | Transboundary and Emerging Diseases, 2018, v. 65, n. 5, p. 1339-1347 | - |
dc.identifier.issn | 1865-1674 | - |
dc.identifier.uri | http://hdl.handle.net/10722/325386 | - |
dc.description.abstract | Highly pathogenic avian influenza (HPAI) viruses of the H5N1 subtype are a major concern to human and animal health in Indonesia. This study aimed to characterize transmission dynamics of H5N1 over time using novel Bayesian phylogeography methods to identify factors which have influenced the spread of H5N1 in Indonesia. We used publicly available hemagglutinin sequence data sampled between 2003 and 2016 to model ancestral state reconstruction of HPAI H5N1 evolution. We found strong support for H5N1 transmission routes between provinces in Java Island and inter-island transmissions, such as between Nusa Tenggara and Kalimantan Islands, not previously described. The spread is consistent with wild bird flyways and poultry trading routes. H5N1 migration was associated with the regions of high chicken densities and low human development indices. These results can be used to inform more targeted planning of H5N1 control and prevention activities in Indonesia. | - |
dc.language | eng | - |
dc.relation.ispartof | Transboundary and Emerging Diseases | - |
dc.subject | H5N1 Subtype | - |
dc.subject | Indonesia | - |
dc.subject | Influenza A Virus | - |
dc.subject | One Health | - |
dc.subject | Phylogeography | - |
dc.title | Phylogeography of H5N1 avian influenza virus in Indonesia | - |
dc.type | Article | - |
dc.description.nature | link_to_subscribed_fulltext | - |
dc.identifier.doi | 10.1111/tbed.12883 | - |
dc.identifier.pmid | 29691995 | - |
dc.identifier.scopus | eid_2-s2.0-85046095864 | - |
dc.identifier.volume | 65 | - |
dc.identifier.issue | 5 | - |
dc.identifier.spage | 1339 | - |
dc.identifier.epage | 1347 | - |
dc.identifier.eissn | 1865-1682 | - |
dc.identifier.isi | WOS:000445742800025 | - |