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Article: Discovery and characterization of single nucleotide polymorphisms in two anadromous alosine fishes of conservation concern

TitleDiscovery and characterization of single nucleotide polymorphisms in two anadromous alosine fishes of conservation concern
Authors
Keywordsalewife
anadromous
blueback herring
conservation
fisheries management
SNPs
Issue Date2017
Citation
Ecology and Evolution, 2017, v. 7, n. 17, p. 6638-6648 How to Cite?
AbstractFreshwater habitat alteration and marine fisheries can affect anadromous fish species, and populations fluctuating in size elicit conservation concern and coordinated management. We describe the development and characterization of two sets of 96 single nucleotide polymorphism (SNP) assays for two species of anadromous alosine fishes, alewife and blueback herring (collectively known as river herring), that are native to the Atlantic coast of North America. We used data from high-throughput DNA sequencing to discover SNPs and then developed molecular genetic assays for genotyping sets of 96 individual loci in each species. The two sets of assays were validated with multiple populations that encompass both the geographic range and the known regional genetic stocks of both species. The SNP panels developed herein accurately resolved the genetic stock structure for alewife and blueback herring that was previously identified using microsatellites and assigned individuals to regional stock of origin with high accuracy. These genetic markers, which generate data that are easily shared and combined, will greatly facilitate ongoing conservation and management of river herring including genetic assignment of marine caught individuals to stock of origin.
Persistent Identifierhttp://hdl.handle.net/10722/308723
PubMed Central ID
ISI Accession Number ID

 

DC FieldValueLanguage
dc.contributor.authorBaetscher, Diana S.-
dc.contributor.authorHasselman, Daniel J.-
dc.contributor.authorReid, Kerry-
dc.contributor.authorPalkovacs, Eric P.-
dc.contributor.authorGarza, John Carlos-
dc.date.accessioned2021-12-08T07:49:59Z-
dc.date.available2021-12-08T07:49:59Z-
dc.date.issued2017-
dc.identifier.citationEcology and Evolution, 2017, v. 7, n. 17, p. 6638-6648-
dc.identifier.urihttp://hdl.handle.net/10722/308723-
dc.description.abstractFreshwater habitat alteration and marine fisheries can affect anadromous fish species, and populations fluctuating in size elicit conservation concern and coordinated management. We describe the development and characterization of two sets of 96 single nucleotide polymorphism (SNP) assays for two species of anadromous alosine fishes, alewife and blueback herring (collectively known as river herring), that are native to the Atlantic coast of North America. We used data from high-throughput DNA sequencing to discover SNPs and then developed molecular genetic assays for genotyping sets of 96 individual loci in each species. The two sets of assays were validated with multiple populations that encompass both the geographic range and the known regional genetic stocks of both species. The SNP panels developed herein accurately resolved the genetic stock structure for alewife and blueback herring that was previously identified using microsatellites and assigned individuals to regional stock of origin with high accuracy. These genetic markers, which generate data that are easily shared and combined, will greatly facilitate ongoing conservation and management of river herring including genetic assignment of marine caught individuals to stock of origin.-
dc.languageeng-
dc.relation.ispartofEcology and Evolution-
dc.rightsThis work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.-
dc.subjectalewife-
dc.subjectanadromous-
dc.subjectblueback herring-
dc.subjectconservation-
dc.subjectfisheries management-
dc.subjectSNPs-
dc.titleDiscovery and characterization of single nucleotide polymorphisms in two anadromous alosine fishes of conservation concern-
dc.typeArticle-
dc.description.naturepublished_or_final_version-
dc.identifier.doi10.1002/ece3.3215-
dc.identifier.pmid28904746-
dc.identifier.pmcidPMC5587496-
dc.identifier.scopuseid_2-s2.0-85024925746-
dc.identifier.volume7-
dc.identifier.issue17-
dc.identifier.spage6638-
dc.identifier.epage6648-
dc.identifier.eissn2045-7758-
dc.identifier.isiWOS:000409529800001-

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