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Book Chapter: Genetic analysis

TitleGenetic analysis
Authors
KeywordsMaximum likelihood
Natural selection
Evolution
Sequence alignment
Phylogeny
Bayesian inference
Neighbor joining
Issue Date2012
PublisherHumana Press.
Citation
Genetic analysis. In Kawaoka, Y, Neumann, G (Eds.), Influenza Virus: Methods and Protocols, p. 207-227. Totowa, NJ: Humana Press, 2012 How to Cite?
AbstractGenetic analysis of sequence data is central to determining the evolutionary history and molecular epidemiology of viruses, particularly those such as influenza A virus that have complex ecosystems involving multiple hosts. Here we provide an outline of routine phylogenetic analyses of influenza A viruses including multiple sequence alignment, selecting the best-fit evolutionary model and phylogenetic tree reconstruction using Neighbor joining, Maximum likelihood, and Bayesian inference. © 2012 Springer Science+Business Media, LLC.
Persistent Identifierhttp://hdl.handle.net/10722/289015
ISBN
ISSN
2023 SCImago Journal Rankings: 0.399
PubMed Central ID
Series/Report no.Methods in Molecular Biology ; 865

 

DC FieldValueLanguage
dc.contributor.authorSmith, Gavin J.D.-
dc.contributor.authorBahl, Justin-
dc.contributor.authorVijaykrishna, Dhanasekaran-
dc.date.accessioned2020-10-12T08:06:27Z-
dc.date.available2020-10-12T08:06:27Z-
dc.date.issued2012-
dc.identifier.citationGenetic analysis. In Kawaoka, Y, Neumann, G (Eds.), Influenza Virus: Methods and Protocols, p. 207-227. Totowa, NJ: Humana Press, 2012-
dc.identifier.isbn9781617796203-
dc.identifier.issn1064-3745-
dc.identifier.urihttp://hdl.handle.net/10722/289015-
dc.description.abstractGenetic analysis of sequence data is central to determining the evolutionary history and molecular epidemiology of viruses, particularly those such as influenza A virus that have complex ecosystems involving multiple hosts. Here we provide an outline of routine phylogenetic analyses of influenza A viruses including multiple sequence alignment, selecting the best-fit evolutionary model and phylogenetic tree reconstruction using Neighbor joining, Maximum likelihood, and Bayesian inference. © 2012 Springer Science+Business Media, LLC.-
dc.languageeng-
dc.publisherHumana Press.-
dc.relation.ispartofInfluenza Virus: Methods and Protocols-
dc.relation.ispartofseriesMethods in Molecular Biology ; 865-
dc.subjectMaximum likelihood-
dc.subjectNatural selection-
dc.subjectEvolution-
dc.subjectSequence alignment-
dc.subjectPhylogeny-
dc.subjectBayesian inference-
dc.subjectNeighbor joining-
dc.titleGenetic analysis-
dc.typeBook_Chapter-
dc.description.naturelink_to_OA_fulltext-
dc.identifier.doi10.1007/978-1-61779-621-0_13-
dc.identifier.pmid22528162-
dc.identifier.pmcidPMC7121150-
dc.identifier.scopuseid_2-s2.0-84864573463-
dc.identifier.spage207-
dc.identifier.epage227-
dc.publisher.placeTotowa, NJ-
dc.identifier.issnl1064-3745-

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