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Article: Crystal optimization and preliminary diffraction data analysis of the Smad1 MH1 domain bound to a palindromic SBE DNA element

TitleCrystal optimization and preliminary diffraction data analysis of the Smad1 MH1 domain bound to a palindromic SBE DNA element
Authors
KeywordsSmad1 MH1 domain
Smad-binding element
Issue Date2009
Citation
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2009, v. 65, n. 11, p. 1105-1109 How to Cite?
AbstractThe bone morphogenetic protein (BMP) signalling pathway regulates diverse processes such as cell differentiation, anterior/posterior axis specification, cell growth and the formation of extra-embryonic tissues. The transcription factor Smad1 relays the BMP signal from the cytoplasm to the nucleus, where it binds short DNA-sequence motifs and regulates gene expression. However, how Smad1 selectively targets particular genomic regions is poorly understood. In order to understand the physical basis of the specific interaction of Smad1 with DNA and to contrast it with the highly homologous but functionally distinct Smad3 protein, the DNA-binding Mad-homology 1 (MH1) domain of Smad1 was cocrystallized with a 17-mer palindromic Smad-binding element (SBE). The extensive optimizations of the length, binding-site spacing and terminal sequences of the DNA element in combination with the other crystallization parameters necessary for obtaining diffraction-quality crystals are described here. A 2.7 Å resolution native data set was collected at the National Synchrotron Radiation Research Centre, Taiwan, from crystals grown in a solution containing 0.2 M ammonium tartrate dibasic, 20% PEG 3350, 3% 2 - propanol and 10% glycerol. The data set was indexed and merged in space group P222, with unit-cell parameters a = 73.94, b = 77.49, c = 83.78 Å, = β = = 90°. The solvent content in the unit cell is consistent with the presence of two Smad1 MH1 molecules bound to the duplex DNA in the asymmetric unit. © 2009 International Union of Crystallography. All rights reserved.
Persistent Identifierhttp://hdl.handle.net/10722/253138
ISSN
2020 Impact Factor: 1.056
ISI Accession Number ID

 

DC FieldValueLanguage
dc.contributor.authorBaburajendran, Nithya-
dc.contributor.authorPalasingam, Paaventhan-
dc.contributor.authorNg, Calista Keow Leng-
dc.contributor.authorJauch, Ralf-
dc.contributor.authorKolatkar, Prasanna R.-
dc.date.accessioned2018-05-11T05:38:42Z-
dc.date.available2018-05-11T05:38:42Z-
dc.date.issued2009-
dc.identifier.citationActa Crystallographica Section F: Structural Biology and Crystallization Communications, 2009, v. 65, n. 11, p. 1105-1109-
dc.identifier.issn1744-3091-
dc.identifier.urihttp://hdl.handle.net/10722/253138-
dc.description.abstractThe bone morphogenetic protein (BMP) signalling pathway regulates diverse processes such as cell differentiation, anterior/posterior axis specification, cell growth and the formation of extra-embryonic tissues. The transcription factor Smad1 relays the BMP signal from the cytoplasm to the nucleus, where it binds short DNA-sequence motifs and regulates gene expression. However, how Smad1 selectively targets particular genomic regions is poorly understood. In order to understand the physical basis of the specific interaction of Smad1 with DNA and to contrast it with the highly homologous but functionally distinct Smad3 protein, the DNA-binding Mad-homology 1 (MH1) domain of Smad1 was cocrystallized with a 17-mer palindromic Smad-binding element (SBE). The extensive optimizations of the length, binding-site spacing and terminal sequences of the DNA element in combination with the other crystallization parameters necessary for obtaining diffraction-quality crystals are described here. A 2.7 Å resolution native data set was collected at the National Synchrotron Radiation Research Centre, Taiwan, from crystals grown in a solution containing 0.2 M ammonium tartrate dibasic, 20% PEG 3350, 3% 2 - propanol and 10% glycerol. The data set was indexed and merged in space group P222, with unit-cell parameters a = 73.94, b = 77.49, c = 83.78 Å, = β = = 90°. The solvent content in the unit cell is consistent with the presence of two Smad1 MH1 molecules bound to the duplex DNA in the asymmetric unit. © 2009 International Union of Crystallography. All rights reserved.-
dc.languageeng-
dc.relation.ispartofActa Crystallographica Section F: Structural Biology and Crystallization Communications-
dc.subjectSmad1 MH1 domain-
dc.subjectSmad-binding element-
dc.titleCrystal optimization and preliminary diffraction data analysis of the Smad1 MH1 domain bound to a palindromic SBE DNA element-
dc.typeArticle-
dc.description.naturelink_to_subscribed_fulltext-
dc.identifier.doi10.1107/S1744309109037476-
dc.identifier.pmid19923727-
dc.identifier.scopuseid_2-s2.0-73449104552-
dc.identifier.volume65-
dc.identifier.issue11-
dc.identifier.spage1105-
dc.identifier.epage1109-
dc.identifier.eissn1744-3091-
dc.identifier.isiWOS:000271421800007-
dc.identifier.issnl1744-3091-

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