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Conference Paper: A fast and accurate SNP detection algorithm for next-generation-sequencing data

TitleA fast and accurate SNP detection algorithm for next-generation-sequencing data
Authors
Wang, JJ
Issue Date2012
Citation
IEEE 6th International Conference on Systems Biology (ISB 2012), Xi’an, China, 18-20 August 2012 How to Cite?
AbstractTools have been developed to call Single Nucleotide Polymorphism (SNP) based on Next-generation-sequencing (NGS) data. However, most of them require high sequencing depth, which is too expensive to obtain. Here, we propose a fast and accurate SNP-detection program, FaSD, which could finish SNP calling within four hours for ten-fold human genome NGS data (total 30 gigabases (GB)) in a standard desktop computer with high accuracy.
DescriptionHighlights Track
Persistent Identifierhttp://hdl.handle.net/10722/252637

 

DC FieldValueLanguage
dc.contributor.authorWang, JJ-
dc.date.accessioned2018-04-27T03:49:43Z-
dc.date.available2018-04-27T03:49:43Z-
dc.date.issued2012-
dc.identifier.citationIEEE 6th International Conference on Systems Biology (ISB 2012), Xi’an, China, 18-20 August 2012-
dc.identifier.urihttp://hdl.handle.net/10722/252637-
dc.descriptionHighlights Track-
dc.description.abstractTools have been developed to call Single Nucleotide Polymorphism (SNP) based on Next-generation-sequencing (NGS) data. However, most of them require high sequencing depth, which is too expensive to obtain. Here, we propose a fast and accurate SNP-detection program, FaSD, which could finish SNP calling within four hours for ten-fold human genome NGS data (total 30 gigabases (GB)) in a standard desktop computer with high accuracy.-
dc.languageeng-
dc.relation.ispartofIEEE International Conference on Systems Biology (ISB)-
dc.titleA fast and accurate SNP detection algorithm for next-generation-sequencing data-
dc.typeConference_Paper-
dc.identifier.emailWang, JJ: junwen@hku.hk-
dc.identifier.authorityWang, JJ=rp00280-
dc.identifier.hkuros208318-
dc.publisher.placeXi’an, China-

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