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Conference Paper: A fast and accurate SNP detection algorithm for next-generation-sequencing data
Title | A fast and accurate SNP detection algorithm for next-generation-sequencing data |
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Authors | |
Issue Date | 2012 |
Citation | IEEE 6th International Conference on Systems Biology (ISB 2012), Xi’an, China, 18-20 August 2012 How to Cite? |
Abstract | Tools have been developed to call Single Nucleotide Polymorphism (SNP) based on Next-generation-sequencing (NGS) data. However, most of them require high sequencing depth, which is too expensive to obtain. Here, we propose a fast and accurate SNP-detection program, FaSD, which could finish SNP
calling within four hours for ten-fold human genome NGS data (total 30 gigabases (GB)) in a standard desktop computer with high accuracy. |
Description | Highlights Track |
Persistent Identifier | http://hdl.handle.net/10722/252637 |
DC Field | Value | Language |
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dc.contributor.author | Wang, JJ | - |
dc.date.accessioned | 2018-04-27T03:49:43Z | - |
dc.date.available | 2018-04-27T03:49:43Z | - |
dc.date.issued | 2012 | - |
dc.identifier.citation | IEEE 6th International Conference on Systems Biology (ISB 2012), Xi’an, China, 18-20 August 2012 | - |
dc.identifier.uri | http://hdl.handle.net/10722/252637 | - |
dc.description | Highlights Track | - |
dc.description.abstract | Tools have been developed to call Single Nucleotide Polymorphism (SNP) based on Next-generation-sequencing (NGS) data. However, most of them require high sequencing depth, which is too expensive to obtain. Here, we propose a fast and accurate SNP-detection program, FaSD, which could finish SNP calling within four hours for ten-fold human genome NGS data (total 30 gigabases (GB)) in a standard desktop computer with high accuracy. | - |
dc.language | eng | - |
dc.relation.ispartof | IEEE International Conference on Systems Biology (ISB) | - |
dc.title | A fast and accurate SNP detection algorithm for next-generation-sequencing data | - |
dc.type | Conference_Paper | - |
dc.identifier.email | Wang, JJ: junwen@hku.hk | - |
dc.identifier.authority | Wang, JJ=rp00280 | - |
dc.identifier.hkuros | 208318 | - |
dc.publisher.place | Xi’an, China | - |