File Download
  Links for fulltext
     (May Require Subscription)
Supplementary

Conference Paper: Database for chicken full-length cDNAs

TitleDatabase for chicken full-length cDNAs
Authors
KeywordsAlignment
cDNA
Expressed sequence tag
Issue Date2007
PublisherAmerican Physiological Society.
Citation
2nd International Symposium on Animal Functional Genomics (2nd ISAFG), East Landing, Michigan, USA, 16-19 May 2006. In Physiological Genomics, 2007, v. 28 n. 2, p. 141-145 How to Cite?
AbstractThe generation of full-length cDNA databases is essential for functional genomics studies as well as for correct annotation of species genomic sequences. Human and mouse full-length cDNA projects have provided the biomedical research community with a large amount of gene information. Recent completion of the chicken genome sequence draft now enables a similar full-length cDNA project to be initiated for this species. In this report, we introduce the development of a chicken full-length cDNA database, which will facilitate future research work in this biological system. In this project, chicken expressed sequence tags (ESTs) were aligned onto human and mouse full-length cDNAs (or open reading frames) on the basis of their similarity. More than 588,000 chicken ESTs were aligned to ∼170,000 full-length human and mouse templates obtained from the NEDO, RIKEN, and MGC databases. Many of these templates have known biological functions, and their orthologous chicken genes in the EMBL database are also provided in our database, which is available at http://bioinfo.hku.hk/chicken/. We will continue to collect known chicken full-length cDNAs to update the database for public use. The cDNA alignment results presented herein and on our database will be useful for animal science and veterinary researchers wishing to clone and to confirm full-length chicken cDNAs of interest. Copyright © 2007 the American Physiological Society.
Persistent Identifierhttp://hdl.handle.net/10722/89303
ISSN
2015 Impact Factor: 2.615
2015 SCImago Journal Rankings: 1.545
ISI Accession Number ID
References

 

DC FieldValueLanguage
dc.contributor.authorWang, Yen_HK
dc.contributor.authorWang, Zen_HK
dc.contributor.authorLi, Jen_HK
dc.contributor.authorWang, Yen_HK
dc.contributor.authorLeung, FCCen_HK
dc.date.accessioned2010-09-06T09:55:09Z-
dc.date.available2010-09-06T09:55:09Z-
dc.date.issued2007en_HK
dc.identifier.citation2nd International Symposium on Animal Functional Genomics (2nd ISAFG), East Landing, Michigan, USA, 16-19 May 2006. In Physiological Genomics, 2007, v. 28 n. 2, p. 141-145en_HK
dc.identifier.issn1094-8341en_HK
dc.identifier.urihttp://hdl.handle.net/10722/89303-
dc.description.abstractThe generation of full-length cDNA databases is essential for functional genomics studies as well as for correct annotation of species genomic sequences. Human and mouse full-length cDNA projects have provided the biomedical research community with a large amount of gene information. Recent completion of the chicken genome sequence draft now enables a similar full-length cDNA project to be initiated for this species. In this report, we introduce the development of a chicken full-length cDNA database, which will facilitate future research work in this biological system. In this project, chicken expressed sequence tags (ESTs) were aligned onto human and mouse full-length cDNAs (or open reading frames) on the basis of their similarity. More than 588,000 chicken ESTs were aligned to ∼170,000 full-length human and mouse templates obtained from the NEDO, RIKEN, and MGC databases. Many of these templates have known biological functions, and their orthologous chicken genes in the EMBL database are also provided in our database, which is available at http://bioinfo.hku.hk/chicken/. We will continue to collect known chicken full-length cDNAs to update the database for public use. The cDNA alignment results presented herein and on our database will be useful for animal science and veterinary researchers wishing to clone and to confirm full-length chicken cDNAs of interest. Copyright © 2007 the American Physiological Society.en_HK
dc.languageengen_HK
dc.publisherAmerican Physiological Society.en_HK
dc.relation.ispartofPhysiological Genomicsen_HK
dc.rightsPhysiological Genomics. Copyright © American Physiological Society.-
dc.rightsCreative Commons: Attribution 3.0 Hong Kong License-
dc.subjectAlignmenten_HK
dc.subjectcDNAen_HK
dc.subjectExpressed sequence tagen_HK
dc.subject.meshChickens - genetics-
dc.subject.meshDNA, Complementary - chemistry - genetics-
dc.subject.meshDatabases, Nucleic Acid-
dc.subject.meshExpressed Sequence Tags-
dc.subject.meshSequence Homology, Nucleic Acid-
dc.titleDatabase for chicken full-length cDNAsen_HK
dc.typeConference_Paperen_HK
dc.identifier.openurlhttp://library.hku.hk:4550/resserv?sid=HKU:IR&issn=1094-8341&volume=28&issue=2&spage=141&epage=145&date=2007&atitle=Database+for+chicken+full-length+cDNAsen_HK
dc.identifier.emailWang, Y: cdwyj@yahoo.comen_HK
dc.identifier.emailLeung, FCC: fcleung@hkucc.hku.hken_HK
dc.identifier.authorityWang, Y=rp00801en_HK
dc.identifier.authorityLeung, FCC=rp00731en_HK
dc.description.naturepublished_or_final_version-
dc.identifier.doi10.1152/physiolgenomics.00097.2006en_HK
dc.identifier.pmid17105754-
dc.identifier.scopuseid_2-s2.0-33947721893en_HK
dc.identifier.hkuros167645en_HK
dc.identifier.hkuros133513-
dc.relation.referenceshttp://www.scopus.com/mlt/select.url?eid=2-s2.0-33947721893&selection=ref&src=s&origin=recordpageen_HK
dc.identifier.volume28en_HK
dc.identifier.issue2en_HK
dc.identifier.spage141en_HK
dc.identifier.epage145en_HK
dc.identifier.isiWOS:000244171700001-
dc.publisher.placeUnited Statesen_HK
dc.identifier.scopusauthoridWang, Y=8710320600en_HK
dc.identifier.scopusauthoridWang, Z=14033548900en_HK
dc.identifier.scopusauthoridLi, J=27171035300en_HK
dc.identifier.scopusauthoridWang, Y=36062525200en_HK
dc.identifier.scopusauthoridLeung, FCC=7103078633en_HK

Export via OAI-PMH Interface in XML Formats


OR


Export to Other Non-XML Formats