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Article: The complete mitochondrial genome of the intertidal copepod Tigriopus sp. (Copepoda, Harpactidae) from Korea and phylogenetic considerations

TitleThe complete mitochondrial genome of the intertidal copepod Tigriopus sp. (Copepoda, Harpactidae) from Korea and phylogenetic considerations
Authors
KeywordsBiogeography
Copepoda
Long-polymerase chain reaction
Mitochondrial genome
Sequencing
Tigriopus sp.
Issue Date2006
PublisherElsevier BV. The Journal's web site is located at http://www.elsevier.com/locate/jembe
Citation
Journal Of Experimental Marine Biology And Ecology, 2006, v. 333 n. 2, p. 251-262 How to Cite?
Abstract
This paper reports on the basic characteristics of the mitochondrial genome of the intertidal copepod Tigriopus sp. from Korea, including its structural organization, base composition of rRNAs and protein-encoding genes, and the secondary structure of tRNAs. We amplified the complete mitochondrial DNA of the intertidal copepod Tigriopus sp. from Korea (sampling site Busan) by long-polymerase chain reaction (long-PCR) with conserved primers and sequenced this mitogenome by primer walking using flanking sequences as sequencing primers. The primer informations were obtained as expressed sequence tags (ESTs) from Tigriopus sp. The resultant Tigriopus sp. mitochondrial DNA sequence was 14,301 bp with a conserved structural organization, compared to that of T. japonicus from Japan with significant differences in several protein-coding regions including rRNAs, although the genomic organization of the mitochondrial genome was identical. In order to investigate biogeographic differences within the genus Tigriopus, we analyzed the CO1 gene by sequencing. This way, we compared several Tigriopus species from Korea, Japan, Hong Kong and Taiwan as well as other related species such as T. californicus, T. brevicornis and T. fulvus. The results further support the notion that the copepods display significantly different genomes within the same genus. These findings provide valuable genomic information for further studies on the population genetics and speciation processes within the genus Tigriopus. © 2006 Elsevier B.V. All rights reserved.
Persistent Identifierhttp://hdl.handle.net/10722/73265
ISSN
2013 Impact Factor: 2.475
2013 SCImago Journal Rankings: 1.266
ISI Accession Number ID
References

 

Author Affiliations
  1. Nagasaki University
  2. The University of Hong Kong
  3. Hanyang University
  4. Hong Kong University of Science and Technology
  5. Kangnung National University
DC FieldValueLanguage
dc.contributor.authorJung, SOen_HK
dc.contributor.authorLee, YMen_HK
dc.contributor.authorPark, TJen_HK
dc.contributor.authorPark, HGen_HK
dc.contributor.authorHagiwara, Aen_HK
dc.contributor.authorLeung, KMYen_HK
dc.contributor.authorDahms, HUen_HK
dc.contributor.authorLee, Wen_HK
dc.contributor.authorLee, JSen_HK
dc.date.accessioned2010-09-06T06:49:41Z-
dc.date.available2010-09-06T06:49:41Z-
dc.date.issued2006en_HK
dc.identifier.citationJournal Of Experimental Marine Biology And Ecology, 2006, v. 333 n. 2, p. 251-262en_HK
dc.identifier.issn0022-0981en_HK
dc.identifier.urihttp://hdl.handle.net/10722/73265-
dc.description.abstractThis paper reports on the basic characteristics of the mitochondrial genome of the intertidal copepod Tigriopus sp. from Korea, including its structural organization, base composition of rRNAs and protein-encoding genes, and the secondary structure of tRNAs. We amplified the complete mitochondrial DNA of the intertidal copepod Tigriopus sp. from Korea (sampling site Busan) by long-polymerase chain reaction (long-PCR) with conserved primers and sequenced this mitogenome by primer walking using flanking sequences as sequencing primers. The primer informations were obtained as expressed sequence tags (ESTs) from Tigriopus sp. The resultant Tigriopus sp. mitochondrial DNA sequence was 14,301 bp with a conserved structural organization, compared to that of T. japonicus from Japan with significant differences in several protein-coding regions including rRNAs, although the genomic organization of the mitochondrial genome was identical. In order to investigate biogeographic differences within the genus Tigriopus, we analyzed the CO1 gene by sequencing. This way, we compared several Tigriopus species from Korea, Japan, Hong Kong and Taiwan as well as other related species such as T. californicus, T. brevicornis and T. fulvus. The results further support the notion that the copepods display significantly different genomes within the same genus. These findings provide valuable genomic information for further studies on the population genetics and speciation processes within the genus Tigriopus. © 2006 Elsevier B.V. All rights reserved.en_HK
dc.languageengen_HK
dc.publisherElsevier BV. The Journal's web site is located at http://www.elsevier.com/locate/jembeen_HK
dc.relation.ispartofJournal of Experimental Marine Biology and Ecologyen_HK
dc.rightsJournal of Experimental Marine Biology and Ecology. Copyright © Elsevier BV.en_HK
dc.subjectBiogeographyen_HK
dc.subjectCopepodaen_HK
dc.subjectLong-polymerase chain reactionen_HK
dc.subjectMitochondrial genomeen_HK
dc.subjectSequencingen_HK
dc.subjectTigriopus sp.en_HK
dc.titleThe complete mitochondrial genome of the intertidal copepod Tigriopus sp. (Copepoda, Harpactidae) from Korea and phylogenetic considerationsen_HK
dc.typeArticleen_HK
dc.identifier.openurlhttp://library.hku.hk:4550/resserv?sid=HKU:IR&issn=0022-0981&volume=333&spage=251&epage=262&date=2006&atitle=The+complete+mitochondrial+genome+of+the+intertidal+copepod+Tigriopus+sp.+(Copepoda,+Harpactidae)+from+Korea+and+phylogenetic+considerationsen_HK
dc.identifier.emailLeung, KMY: kmyleung@hku.hken_HK
dc.identifier.authorityLeung, KMY=rp00733en_HK
dc.description.naturelink_to_subscribed_fulltext-
dc.identifier.doi10.1016/j.jembe.2005.12.047en_HK
dc.identifier.scopuseid_2-s2.0-30144443020en_HK
dc.identifier.hkuros115928en_HK
dc.relation.referenceshttp://www.scopus.com/mlt/select.url?eid=2-s2.0-30144443020&selection=ref&src=s&origin=recordpageen_HK
dc.identifier.volume333en_HK
dc.identifier.issue2en_HK
dc.identifier.spage251en_HK
dc.identifier.epage262en_HK
dc.identifier.isiWOS:000238328400010-
dc.publisher.placeNetherlandsen_HK
dc.identifier.scopusauthoridJung, SO=9267995000en_HK
dc.identifier.scopusauthoridLee, YM=36014604800en_HK
dc.identifier.scopusauthoridPark, TJ=7401801920en_HK
dc.identifier.scopusauthoridPark, HG=10939631500en_HK
dc.identifier.scopusauthoridHagiwara, A=7101768426en_HK
dc.identifier.scopusauthoridLeung, KMY=7401860738en_HK
dc.identifier.scopusauthoridDahms, HU=7003562311en_HK
dc.identifier.scopusauthoridLee, W=7407088900en_HK
dc.identifier.scopusauthoridLee, JS=35465338700en_HK

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