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Article: The complete mitochondrial genome of the intertidal copepod Tigriopus sp. (Copepoda, Harpactidae) from Korea and phylogenetic considerations
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TitleThe complete mitochondrial genome of the intertidal copepod Tigriopus sp. (Copepoda, Harpactidae) from Korea and phylogenetic considerations
 
AuthorsJung, SO3
Lee, YM3
Park, TJ3
Park, HG5
Hagiwara, A1
Leung, KMY2
Dahms, HU4
Lee, W3
Lee, JS3
 
KeywordsBiogeography
Copepoda
Long-polymerase chain reaction
Mitochondrial genome
Sequencing
Tigriopus sp.
 
Issue Date2006
 
PublisherElsevier BV. The Journal's web site is located at http://www.elsevier.com/locate/jembe
 
CitationJournal Of Experimental Marine Biology And Ecology, 2006, v. 333 n. 2, p. 251-262 [How to Cite?]
DOI: http://dx.doi.org/10.1016/j.jembe.2005.12.047
 
AbstractThis paper reports on the basic characteristics of the mitochondrial genome of the intertidal copepod Tigriopus sp. from Korea, including its structural organization, base composition of rRNAs and protein-encoding genes, and the secondary structure of tRNAs. We amplified the complete mitochondrial DNA of the intertidal copepod Tigriopus sp. from Korea (sampling site Busan) by long-polymerase chain reaction (long-PCR) with conserved primers and sequenced this mitogenome by primer walking using flanking sequences as sequencing primers. The primer informations were obtained as expressed sequence tags (ESTs) from Tigriopus sp. The resultant Tigriopus sp. mitochondrial DNA sequence was 14,301 bp with a conserved structural organization, compared to that of T. japonicus from Japan with significant differences in several protein-coding regions including rRNAs, although the genomic organization of the mitochondrial genome was identical. In order to investigate biogeographic differences within the genus Tigriopus, we analyzed the CO1 gene by sequencing. This way, we compared several Tigriopus species from Korea, Japan, Hong Kong and Taiwan as well as other related species such as T. californicus, T. brevicornis and T. fulvus. The results further support the notion that the copepods display significantly different genomes within the same genus. These findings provide valuable genomic information for further studies on the population genetics and speciation processes within the genus Tigriopus. © 2006 Elsevier B.V. All rights reserved.
 
ISSN0022-0981
2013 Impact Factor: 2.475
2013 SCImago Journal Rankings: 1.266
 
DOIhttp://dx.doi.org/10.1016/j.jembe.2005.12.047
 
ISI Accession Number IDWOS:000238328400010
 
ReferencesReferences in Scopus
 
DC FieldValue
dc.contributor.authorJung, SO
 
dc.contributor.authorLee, YM
 
dc.contributor.authorPark, TJ
 
dc.contributor.authorPark, HG
 
dc.contributor.authorHagiwara, A
 
dc.contributor.authorLeung, KMY
 
dc.contributor.authorDahms, HU
 
dc.contributor.authorLee, W
 
dc.contributor.authorLee, JS
 
dc.date.accessioned2010-09-06T06:49:41Z
 
dc.date.available2010-09-06T06:49:41Z
 
dc.date.issued2006
 
dc.description.abstractThis paper reports on the basic characteristics of the mitochondrial genome of the intertidal copepod Tigriopus sp. from Korea, including its structural organization, base composition of rRNAs and protein-encoding genes, and the secondary structure of tRNAs. We amplified the complete mitochondrial DNA of the intertidal copepod Tigriopus sp. from Korea (sampling site Busan) by long-polymerase chain reaction (long-PCR) with conserved primers and sequenced this mitogenome by primer walking using flanking sequences as sequencing primers. The primer informations were obtained as expressed sequence tags (ESTs) from Tigriopus sp. The resultant Tigriopus sp. mitochondrial DNA sequence was 14,301 bp with a conserved structural organization, compared to that of T. japonicus from Japan with significant differences in several protein-coding regions including rRNAs, although the genomic organization of the mitochondrial genome was identical. In order to investigate biogeographic differences within the genus Tigriopus, we analyzed the CO1 gene by sequencing. This way, we compared several Tigriopus species from Korea, Japan, Hong Kong and Taiwan as well as other related species such as T. californicus, T. brevicornis and T. fulvus. The results further support the notion that the copepods display significantly different genomes within the same genus. These findings provide valuable genomic information for further studies on the population genetics and speciation processes within the genus Tigriopus. © 2006 Elsevier B.V. All rights reserved.
 
dc.description.naturelink_to_subscribed_fulltext
 
dc.identifier.citationJournal Of Experimental Marine Biology And Ecology, 2006, v. 333 n. 2, p. 251-262 [How to Cite?]
DOI: http://dx.doi.org/10.1016/j.jembe.2005.12.047
 
dc.identifier.doihttp://dx.doi.org/10.1016/j.jembe.2005.12.047
 
dc.identifier.epage262
 
dc.identifier.hkuros115928
 
dc.identifier.isiWOS:000238328400010
 
dc.identifier.issn0022-0981
2013 Impact Factor: 2.475
2013 SCImago Journal Rankings: 1.266
 
dc.identifier.issue2
 
dc.identifier.openurl
 
dc.identifier.scopuseid_2-s2.0-30144443020
 
dc.identifier.spage251
 
dc.identifier.urihttp://hdl.handle.net/10722/73265
 
dc.identifier.volume333
 
dc.languageeng
 
dc.publisherElsevier BV. The Journal's web site is located at http://www.elsevier.com/locate/jembe
 
dc.publisher.placeNetherlands
 
dc.relation.ispartofJournal of Experimental Marine Biology and Ecology
 
dc.relation.referencesReferences in Scopus
 
dc.rightsJournal of Experimental Marine Biology and Ecology. Copyright © Elsevier BV.
 
dc.subjectBiogeography
 
dc.subjectCopepoda
 
dc.subjectLong-polymerase chain reaction
 
dc.subjectMitochondrial genome
 
dc.subjectSequencing
 
dc.subjectTigriopus sp.
 
dc.titleThe complete mitochondrial genome of the intertidal copepod Tigriopus sp. (Copepoda, Harpactidae) from Korea and phylogenetic considerations
 
dc.typeArticle
 
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Author Affiliations
  1. Nagasaki University
  2. The University of Hong Kong
  3. Hanyang University
  4. Hong Kong University of Science and Technology
  5. Kangnung National University