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Article: Combining functional and linkage disequilibrium information in the selection of tag SNPs

TitleCombining functional and linkage disequilibrium information in the selection of tag SNPs
Authors
Issue Date2007
PublisherOxford University Press. The Journal's web site is located at http://bioinformatics.oxfordjournals.org/
Citation
Bioinformatics, 2007, v. 23 n. 1, p. 129-131 How to Cite?
AbstractSummary: We have developed an online program, WCLUSTAG, for tag SNP selection that allows the user to specify variable tagging thresholds for different SNPs. Tag SNPs are selected such that a SNP with user-specified tagging threshold C will have a minimum R2 of C with at least one tag SNP. This flexible feature is useful for researchers who wish to prioritize genomic regions or SNPs in an association study. © 2007 Oxford University Press.
Persistent Identifierhttp://hdl.handle.net/10722/54299
ISSN
2015 Impact Factor: 5.766
2015 SCImago Journal Rankings: 4.643
ISI Accession Number ID
References

 

DC FieldValueLanguage
dc.contributor.authorSham, PCen_HK
dc.contributor.authorAo, SIen_HK
dc.contributor.authorKwan, JSHen_HK
dc.contributor.authorKao, Pen_HK
dc.contributor.authorCheung, Fen_HK
dc.contributor.authorFong, PYen_HK
dc.contributor.authorNg, MKen_HK
dc.date.accessioned2009-04-03T07:42:34Z-
dc.date.available2009-04-03T07:42:34Z-
dc.date.issued2007en_HK
dc.identifier.citationBioinformatics, 2007, v. 23 n. 1, p. 129-131en_HK
dc.identifier.issn1367-4803en_HK
dc.identifier.urihttp://hdl.handle.net/10722/54299-
dc.description.abstractSummary: We have developed an online program, WCLUSTAG, for tag SNP selection that allows the user to specify variable tagging thresholds for different SNPs. Tag SNPs are selected such that a SNP with user-specified tagging threshold C will have a minimum R2 of C with at least one tag SNP. This flexible feature is useful for researchers who wish to prioritize genomic regions or SNPs in an association study. © 2007 Oxford University Press.en_HK
dc.languageengen_HK
dc.publisherOxford University Press. The Journal's web site is located at http://bioinformatics.oxfordjournals.org/en_HK
dc.relation.ispartofBioinformaticsen_HK
dc.rightsBioinformatics. Copyright © Oxford University Press.en_HK
dc.rightsCreative Commons: Attribution 3.0 Hong Kong License-
dc.rightsThis is a pre-copy-editing, author-produced PDF of an article accepted for publication in Bioinformatics, following peer review. The definitive publisher-authenticated version Bioinformatics, 2007, v. 23 n. 1, p. 129-131 is available online at: http://bioinformatics.oxfordjournals.org/en_HK
dc.subject.meshLinkage Disequilibriumen_HK
dc.subject.meshChromosome Mapping - methodsen_HK
dc.subject.meshPolymorphism, Single Nucleotide - geneticsen_HK
dc.subject.meshCluster Analysisen_HK
dc.subject.meshGenetic Markersen_HK
dc.titleCombining functional and linkage disequilibrium information in the selection of tag SNPsen_HK
dc.typeArticleen_HK
dc.identifier.openurlhttp://library.hku.hk:4550/resserv?sid=HKU:IR&issn=1367-4803&volume=23&issue=1&spage=129&epage=131&date=2007&atitle=Combining+functional+and+linkage+disequilibrium+information+in+the+selection+of+tag+SNPsen_HK
dc.identifier.emailSham, PC: pcsham@hku.hken_HK
dc.identifier.authoritySham, PC=rp00459en_HK
dc.description.naturepostprinten_HK
dc.identifier.doi10.1093/bioinformatics/btl532en_HK
dc.identifier.pmid17060359-
dc.identifier.scopuseid_2-s2.0-33845868196en_HK
dc.identifier.hkuros133105-
dc.relation.referenceshttp://www.scopus.com/mlt/select.url?eid=2-s2.0-33845868196&selection=ref&src=s&origin=recordpageen_HK
dc.identifier.volume23en_HK
dc.identifier.issue1en_HK
dc.identifier.spage129en_HK
dc.identifier.epage131en_HK
dc.identifier.isiWOS:000243060300022-
dc.publisher.placeUnited Kingdomen_HK
dc.identifier.scopusauthoridSham, PC=34573429300en_HK
dc.identifier.scopusauthoridAo, SI=8581155100en_HK
dc.identifier.scopusauthoridKwan, JSH=36723487400en_HK
dc.identifier.scopusauthoridKao, P=24280722500en_HK
dc.identifier.scopusauthoridCheung, F=15753524900en_HK
dc.identifier.scopusauthoridFong, PY=12242921700en_HK
dc.identifier.scopusauthoridNg, MK=34571761900en_HK
dc.identifier.citeulike1002000-

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