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Article: Metabolomic identification of novel biomarkers of nasopharyngeal carcinoma

TitleMetabolomic identification of novel biomarkers of nasopharyngeal carcinoma
Authors
Issue Date2014
PublisherRoyal Society of Chemistry: Open Access. The Journal's web site is located at http://pubs.rsc.org/en/journals/journalissues/ra
Citation
RSC Advances, 2014, v. 4 n. 103, p. 59094-59101 How to Cite?
AbstractThis paper introduces a new identification strategy of novel metabolic biomarkers for nasopharyngeal carcinoma (NPC). Here, we combined gas chromatography-mass spectrometry (GC-MS) metabolic profiling with three partial least squares-discriminant analysis (PLS-DA) based variable selection methods to screen the metabolic biomarkers of NPC. We found that the variable importance on projection (VIP) method exhibited better efficiency than the coefficients β and the loadings plot for the metabolomics data set of 39 NPC patients and 40 healthy controls. In addition, we proved that the area under receiver operating characteristic curve (AUC) was more sensitive than the correct rate to evaluate the discrimination ability of the classical models. Therefore, three novel candidate biomarkers, glucose, glutamic acid and pyroglutamate were identified, with a correct rate of 97.47% and an AUC value of 97.40%. Our results suggested that the metabolic disorders of NPC were mainly reflected in the glycolysis and glutamate metabolism; in addition, metabolic levels of the related metabolic pathways may affect each other, such as the TCA cycle and lipid metabolism. We believe that the findings of these novel metabolites will be very helpful for early-diagnosis and subsequent pathogenesis research of NPC.
Persistent Identifierhttp://hdl.handle.net/10722/267533
ISSN
2017 Impact Factor: 2.936
2015 SCImago Journal Rankings: 0.990
ISI Accession Number ID

 

DC FieldValueLanguage
dc.contributor.authorYi, L-
dc.contributor.authorDong, N-
dc.contributor.authorShi, S-
dc.contributor.authorDeng, B-
dc.contributor.authorYun, Y-
dc.contributor.authorYi, Z-
dc.contributor.authorZhang, Y-
dc.date.accessioned2019-02-20T01:52:28Z-
dc.date.available2019-02-20T01:52:28Z-
dc.date.issued2014-
dc.identifier.citationRSC Advances, 2014, v. 4 n. 103, p. 59094-59101-
dc.identifier.issn2046-2069-
dc.identifier.urihttp://hdl.handle.net/10722/267533-
dc.description.abstractThis paper introduces a new identification strategy of novel metabolic biomarkers for nasopharyngeal carcinoma (NPC). Here, we combined gas chromatography-mass spectrometry (GC-MS) metabolic profiling with three partial least squares-discriminant analysis (PLS-DA) based variable selection methods to screen the metabolic biomarkers of NPC. We found that the variable importance on projection (VIP) method exhibited better efficiency than the coefficients β and the loadings plot for the metabolomics data set of 39 NPC patients and 40 healthy controls. In addition, we proved that the area under receiver operating characteristic curve (AUC) was more sensitive than the correct rate to evaluate the discrimination ability of the classical models. Therefore, three novel candidate biomarkers, glucose, glutamic acid and pyroglutamate were identified, with a correct rate of 97.47% and an AUC value of 97.40%. Our results suggested that the metabolic disorders of NPC were mainly reflected in the glycolysis and glutamate metabolism; in addition, metabolic levels of the related metabolic pathways may affect each other, such as the TCA cycle and lipid metabolism. We believe that the findings of these novel metabolites will be very helpful for early-diagnosis and subsequent pathogenesis research of NPC.-
dc.languageeng-
dc.publisherRoyal Society of Chemistry: Open Access. The Journal's web site is located at http://pubs.rsc.org/en/journals/journalissues/ra-
dc.relation.ispartofRSC Advances-
dc.titleMetabolomic identification of novel biomarkers of nasopharyngeal carcinoma-
dc.typeArticle-
dc.identifier.emailDong, N: npdong@hku.hk-
dc.description.naturelink_to_OA_fulltext-
dc.identifier.doi10.1039/C4RA09860A-
dc.identifier.scopuseid_2-s2.0-84911879267-
dc.identifier.hkuros296845-
dc.identifier.volume4-
dc.identifier.issue103-
dc.identifier.spage59094-
dc.identifier.epage59101-
dc.identifier.isiWOS:000345652300023-
dc.publisher.placeUnited Kingdom-

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