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Article: Papillomavirus subtypes are natural and old taxa: Phylogeny of human papillomavirus types 44 and 55 and 68a and -b

TitlePapillomavirus subtypes are natural and old taxa: Phylogeny of human papillomavirus types 44 and 55 and 68a and -b
Authors
Issue Date2005
PublisherAmerican Society for Microbiology. The Journal's web site is located at http://jvi.asm.org/
Citation
Journal Of Virology, 2005, v. 79 n. 10, p. 6565-6569 How to Cite?
AbstractA human papillomavirus (HPV) type is defined as an HPV isolate whose L1 gene sequence is at least 10% different from that of any other type, while a subtype is 2 to 10% different from any HPV type. In order to analyze the phylogeny behind the subtype definition, we compared 49 isolates of HPV type 44 (HPV-44) and its subtype HPV-55, previously misclassified as a separate type, and 41 isolates of the subtype pair HPV-68a and -b, sampled from cohorts in four continents. The subtypes of each pair are separated by deep dichotomic branching, and three of the four subtypes have evolved large phylogenetic clusters of genomic variants forming a "star" phylogeny, with some branches specific for ethnically defined cohorts. We conclude that subtypes of HPV types are natural and old taxa, equivalent to types, which either diverged more recently than types or evolved more slowly. Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Persistent Identifierhttp://hdl.handle.net/10722/148414
ISSN
2015 Impact Factor: 4.606
2015 SCImago Journal Rankings: 3.347
ISI Accession Number ID
References

 

DC FieldValueLanguage
dc.contributor.authorCallejaMacias, IEen_HK
dc.contributor.authorKalantari, Men_HK
dc.contributor.authorAllan, Ben_HK
dc.contributor.authorWilliamson, ALen_HK
dc.contributor.authorChung, LPen_HK
dc.contributor.authorCollins, RJen_HK
dc.contributor.authorZuna, REen_HK
dc.contributor.authorDunn, STen_HK
dc.contributor.authorOrtizLopez, Ren_HK
dc.contributor.authorBarreraSaldaña, HAen_HK
dc.contributor.authorCubie, HAen_HK
dc.contributor.authorCuschieri, Ken_HK
dc.contributor.authorVilla, LLen_HK
dc.contributor.authorBernard, HUen_HK
dc.date.accessioned2012-05-29T06:12:49Z-
dc.date.available2012-05-29T06:12:49Z-
dc.date.issued2005en_HK
dc.identifier.citationJournal Of Virology, 2005, v. 79 n. 10, p. 6565-6569en_HK
dc.identifier.issn0022-538Xen_HK
dc.identifier.urihttp://hdl.handle.net/10722/148414-
dc.description.abstractA human papillomavirus (HPV) type is defined as an HPV isolate whose L1 gene sequence is at least 10% different from that of any other type, while a subtype is 2 to 10% different from any HPV type. In order to analyze the phylogeny behind the subtype definition, we compared 49 isolates of HPV type 44 (HPV-44) and its subtype HPV-55, previously misclassified as a separate type, and 41 isolates of the subtype pair HPV-68a and -b, sampled from cohorts in four continents. The subtypes of each pair are separated by deep dichotomic branching, and three of the four subtypes have evolved large phylogenetic clusters of genomic variants forming a "star" phylogeny, with some branches specific for ethnically defined cohorts. We conclude that subtypes of HPV types are natural and old taxa, equivalent to types, which either diverged more recently than types or evolved more slowly. Copyright © 2005, American Society for Microbiology. All Rights Reserved.en_HK
dc.languageengen_US
dc.publisherAmerican Society for Microbiology. The Journal's web site is located at http://jvi.asm.org/en_HK
dc.relation.ispartofJournal of Virologyen_HK
dc.subject.meshMolecular Sequence Dataen_US
dc.subject.meshPapillomaviridae - Classification - Geneticsen_US
dc.subject.meshPhylogenyen_US
dc.titlePapillomavirus subtypes are natural and old taxa: Phylogeny of human papillomavirus types 44 and 55 and 68a and -ben_HK
dc.typeArticleen_HK
dc.identifier.emailChung, LP: lpchung@hkucc.hku.hken_HK
dc.identifier.emailCollins, RJ: rcollins@hkucc.hku.hken_HK
dc.identifier.authorityChung, LP=rp00249en_HK
dc.identifier.authorityCollins, RJ=rp00251en_HK
dc.description.naturelink_to_subscribed_fulltexten_US
dc.identifier.doi10.1128/JVI.79.10.6565-6569.2005en_HK
dc.identifier.pmid15858044-
dc.identifier.scopuseid_2-s2.0-20944443529en_HK
dc.relation.referenceshttp://www.scopus.com/mlt/select.url?eid=2-s2.0-20944443529&selection=ref&src=s&origin=recordpageen_HK
dc.identifier.volume79en_HK
dc.identifier.issue10en_HK
dc.identifier.spage6565en_HK
dc.identifier.epage6569en_HK
dc.identifier.isiWOS:000228814400071-
dc.publisher.placeUnited Statesen_HK
dc.identifier.scopusauthoridCallejaMacias, IE=6507782063en_HK
dc.identifier.scopusauthoridKalantari, M=6701552986en_HK
dc.identifier.scopusauthoridAllan, B=7102506110en_HK
dc.identifier.scopusauthoridWilliamson, AL=8363457500en_HK
dc.identifier.scopusauthoridChung, LP=24315879100en_HK
dc.identifier.scopusauthoridCollins, RJ=7403350455en_HK
dc.identifier.scopusauthoridZuna, RE=6701422748en_HK
dc.identifier.scopusauthoridDunn, ST=7201627243en_HK
dc.identifier.scopusauthoridOrtizLopez, R=6603385591en_HK
dc.identifier.scopusauthoridBarreraSaldaña, HA=7005781887en_HK
dc.identifier.scopusauthoridCubie, HA=7003598660en_HK
dc.identifier.scopusauthoridCuschieri, K=6506948763en_HK
dc.identifier.scopusauthoridVilla, LL=7102824355en_HK
dc.identifier.scopusauthoridBernard, HU=7103326376en_HK

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