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- Publisher Website: 10.1128/JVI.79.10.6565-6569.2005
- Scopus: eid_2-s2.0-20944443529
- PMID: 15858044
- WOS: WOS:000228814400071
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Article: Papillomavirus subtypes are natural and old taxa: Phylogeny of human papillomavirus types 44 and 55 and 68a and -b
Title | Papillomavirus subtypes are natural and old taxa: Phylogeny of human papillomavirus types 44 and 55 and 68a and -b |
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Authors | |
Issue Date | 2005 |
Publisher | American Society for Microbiology. The Journal's web site is located at http://jvi.asm.org/ |
Citation | Journal Of Virology, 2005, v. 79 n. 10, p. 6565-6569 How to Cite? |
Abstract | A human papillomavirus (HPV) type is defined as an HPV isolate whose L1 gene sequence is at least 10% different from that of any other type, while a subtype is 2 to 10% different from any HPV type. In order to analyze the phylogeny behind the subtype definition, we compared 49 isolates of HPV type 44 (HPV-44) and its subtype HPV-55, previously misclassified as a separate type, and 41 isolates of the subtype pair HPV-68a and -b, sampled from cohorts in four continents. The subtypes of each pair are separated by deep dichotomic branching, and three of the four subtypes have evolved large phylogenetic clusters of genomic variants forming a "star" phylogeny, with some branches specific for ethnically defined cohorts. We conclude that subtypes of HPV types are natural and old taxa, equivalent to types, which either diverged more recently than types or evolved more slowly. Copyright © 2005, American Society for Microbiology. All Rights Reserved. |
Persistent Identifier | http://hdl.handle.net/10722/148414 |
ISSN | 2023 Impact Factor: 4.0 2023 SCImago Journal Rankings: 1.378 |
ISI Accession Number ID | |
References |
DC Field | Value | Language |
---|---|---|
dc.contributor.author | CallejaMacias, IE | en_HK |
dc.contributor.author | Kalantari, M | en_HK |
dc.contributor.author | Allan, B | en_HK |
dc.contributor.author | Williamson, AL | en_HK |
dc.contributor.author | Chung, LP | en_HK |
dc.contributor.author | Collins, RJ | en_HK |
dc.contributor.author | Zuna, RE | en_HK |
dc.contributor.author | Dunn, ST | en_HK |
dc.contributor.author | OrtizLopez, R | en_HK |
dc.contributor.author | BarreraSaldaña, HA | en_HK |
dc.contributor.author | Cubie, HA | en_HK |
dc.contributor.author | Cuschieri, K | en_HK |
dc.contributor.author | Villa, LL | en_HK |
dc.contributor.author | Bernard, HU | en_HK |
dc.date.accessioned | 2012-05-29T06:12:49Z | - |
dc.date.available | 2012-05-29T06:12:49Z | - |
dc.date.issued | 2005 | en_HK |
dc.identifier.citation | Journal Of Virology, 2005, v. 79 n. 10, p. 6565-6569 | en_HK |
dc.identifier.issn | 0022-538X | en_HK |
dc.identifier.uri | http://hdl.handle.net/10722/148414 | - |
dc.description.abstract | A human papillomavirus (HPV) type is defined as an HPV isolate whose L1 gene sequence is at least 10% different from that of any other type, while a subtype is 2 to 10% different from any HPV type. In order to analyze the phylogeny behind the subtype definition, we compared 49 isolates of HPV type 44 (HPV-44) and its subtype HPV-55, previously misclassified as a separate type, and 41 isolates of the subtype pair HPV-68a and -b, sampled from cohorts in four continents. The subtypes of each pair are separated by deep dichotomic branching, and three of the four subtypes have evolved large phylogenetic clusters of genomic variants forming a "star" phylogeny, with some branches specific for ethnically defined cohorts. We conclude that subtypes of HPV types are natural and old taxa, equivalent to types, which either diverged more recently than types or evolved more slowly. Copyright © 2005, American Society for Microbiology. All Rights Reserved. | en_HK |
dc.language | eng | en_US |
dc.publisher | American Society for Microbiology. The Journal's web site is located at http://jvi.asm.org/ | en_HK |
dc.relation.ispartof | Journal of Virology | en_HK |
dc.subject.mesh | Molecular Sequence Data | en_US |
dc.subject.mesh | Papillomaviridae - Classification - Genetics | en_US |
dc.subject.mesh | Phylogeny | en_US |
dc.title | Papillomavirus subtypes are natural and old taxa: Phylogeny of human papillomavirus types 44 and 55 and 68a and -b | en_HK |
dc.type | Article | en_HK |
dc.identifier.email | Chung, LP: lpchung@hkucc.hku.hk | en_HK |
dc.identifier.email | Collins, RJ: rcollins@hkucc.hku.hk | en_HK |
dc.identifier.authority | Chung, LP=rp00249 | en_HK |
dc.identifier.authority | Collins, RJ=rp00251 | en_HK |
dc.description.nature | link_to_subscribed_fulltext | en_US |
dc.identifier.doi | 10.1128/JVI.79.10.6565-6569.2005 | en_HK |
dc.identifier.pmid | 15858044 | - |
dc.identifier.scopus | eid_2-s2.0-20944443529 | en_HK |
dc.relation.references | http://www.scopus.com/mlt/select.url?eid=2-s2.0-20944443529&selection=ref&src=s&origin=recordpage | en_HK |
dc.identifier.volume | 79 | en_HK |
dc.identifier.issue | 10 | en_HK |
dc.identifier.spage | 6565 | en_HK |
dc.identifier.epage | 6569 | en_HK |
dc.identifier.isi | WOS:000228814400071 | - |
dc.publisher.place | United States | en_HK |
dc.identifier.scopusauthorid | CallejaMacias, IE=6507782063 | en_HK |
dc.identifier.scopusauthorid | Kalantari, M=6701552986 | en_HK |
dc.identifier.scopusauthorid | Allan, B=7102506110 | en_HK |
dc.identifier.scopusauthorid | Williamson, AL=8363457500 | en_HK |
dc.identifier.scopusauthorid | Chung, LP=24315879100 | en_HK |
dc.identifier.scopusauthorid | Collins, RJ=7403350455 | en_HK |
dc.identifier.scopusauthorid | Zuna, RE=6701422748 | en_HK |
dc.identifier.scopusauthorid | Dunn, ST=7201627243 | en_HK |
dc.identifier.scopusauthorid | OrtizLopez, R=6603385591 | en_HK |
dc.identifier.scopusauthorid | BarreraSaldaña, HA=7005781887 | en_HK |
dc.identifier.scopusauthorid | Cubie, HA=7003598660 | en_HK |
dc.identifier.scopusauthorid | Cuschieri, K=6506948763 | en_HK |
dc.identifier.scopusauthorid | Villa, LL=7102824355 | en_HK |
dc.identifier.scopusauthorid | Bernard, HU=7103326376 | en_HK |
dc.identifier.issnl | 0022-538X | - |