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Article: Robust filtering for stochastic genetic regulatory networks with time-varying delay
Title | Robust filtering for stochastic genetic regulatory networks with time-varying delay | ||||||||||||
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Authors | |||||||||||||
Keywords | Decay rate Genetic regulatory network Polytopic-type uncertainty Stochastic disturbance Time-varying delay | ||||||||||||
Issue Date | 2009 | ||||||||||||
Publisher | Elsevier Inc. The Journal's web site is located at http://www.elsevier.com/locate/mbs | ||||||||||||
Citation | Mathematical Biosciences, 2009, v. 220 n. 2, p. 73-80 How to Cite? | ||||||||||||
Abstract | This paper addresses the robust filtering problem for a class of linear genetic regulatory networks (GRNs) with stochastic disturbances, parameter uncertainties and time delays. The parameter uncertainties are assumed to reside in a polytopic region, the stochastic disturbance is state-dependent described by a scalar Brownian motion, and the time-varying delays enter into both the translation process and the feedback regulation process. We aim to estimate the true concentrations of mRNA and protein by designing a linear filter such that, for all admissible time delays, stochastic disturbances as well as polytopic uncertainties, the augmented state estimation dynamics is exponentially mean square stable with an expected decay rate. A delay-dependent linear matrix inequality (LMI) approach is first developed to derive sufficient conditions that guarantee the exponential stability of the augmented dynamics, and then the filter gains are parameterized in terms of the solution to a set of LMIs. Note that LMIs can be easily solved by using standard software packages. A simulation example is exploited in order to illustrate the effectiveness of the proposed design procedures. © 2009 Elsevier Inc. All rights reserved. | ||||||||||||
Persistent Identifier | http://hdl.handle.net/10722/124817 | ||||||||||||
ISSN | 2023 Impact Factor: 1.9 2023 SCImago Journal Rankings: 0.639 | ||||||||||||
ISI Accession Number ID |
Funding Information: This work was supported in part by the Biotechnology and Biological Sciences Research Council (BBSRC) of the U.K. under Grants BB/C506264/1 and 100/EGM17735, an International joint Project sponsored by the Royal Society of the U.K., the Research Grants Council of Hong Kong under Grant HKU 7031/06P, the National Natural Science Foundation of China under Grant 60804028, and the Alexander von Humboldt Foundation of Germany. | ||||||||||||
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DC Field | Value | Language |
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dc.contributor.author | Wei, G | en_HK |
dc.contributor.author | Wang, Z | en_HK |
dc.contributor.author | Lam, J | en_HK |
dc.contributor.author | Fraser, K | en_HK |
dc.contributor.author | Rao, GP | en_HK |
dc.contributor.author | Liu, X | en_HK |
dc.date.accessioned | 2010-10-31T10:55:52Z | - |
dc.date.available | 2010-10-31T10:55:52Z | - |
dc.date.issued | 2009 | en_HK |
dc.identifier.citation | Mathematical Biosciences, 2009, v. 220 n. 2, p. 73-80 | en_HK |
dc.identifier.issn | 0025-5564 | en_HK |
dc.identifier.uri | http://hdl.handle.net/10722/124817 | - |
dc.description.abstract | This paper addresses the robust filtering problem for a class of linear genetic regulatory networks (GRNs) with stochastic disturbances, parameter uncertainties and time delays. The parameter uncertainties are assumed to reside in a polytopic region, the stochastic disturbance is state-dependent described by a scalar Brownian motion, and the time-varying delays enter into both the translation process and the feedback regulation process. We aim to estimate the true concentrations of mRNA and protein by designing a linear filter such that, for all admissible time delays, stochastic disturbances as well as polytopic uncertainties, the augmented state estimation dynamics is exponentially mean square stable with an expected decay rate. A delay-dependent linear matrix inequality (LMI) approach is first developed to derive sufficient conditions that guarantee the exponential stability of the augmented dynamics, and then the filter gains are parameterized in terms of the solution to a set of LMIs. Note that LMIs can be easily solved by using standard software packages. A simulation example is exploited in order to illustrate the effectiveness of the proposed design procedures. © 2009 Elsevier Inc. All rights reserved. | en_HK |
dc.language | eng | en_HK |
dc.publisher | Elsevier Inc. The Journal's web site is located at http://www.elsevier.com/locate/mbs | en_HK |
dc.relation.ispartof | Mathematical Biosciences | en_HK |
dc.rights | This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. | - |
dc.rights | NOTICE: this is the author’s version of a work that was accepted for publication in <Mathematical Biosciences>. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in PUBLICATION, [VOL 220, ISSUE 2, (AUG 2009)] DOI eid_2-s2.0-67650682711 | - |
dc.subject | Decay rate | - |
dc.subject | Genetic regulatory network | - |
dc.subject | Polytopic-type uncertainty | - |
dc.subject | Stochastic disturbance | - |
dc.subject | Time-varying delay | - |
dc.subject.mesh | Algorithms | en_HK |
dc.subject.mesh | Computer Simulation | en_HK |
dc.subject.mesh | Feedback, Physiological - genetics | en_HK |
dc.subject.mesh | Gene Regulatory Networks - physiology | en_HK |
dc.subject.mesh | Kinetics | en_HK |
dc.subject.mesh | Linear Models | en_HK |
dc.subject.mesh | Models, Genetic | en_HK |
dc.subject.mesh | Proteins - metabolism | en_HK |
dc.subject.mesh | RNA, Messenger - metabolism | en_HK |
dc.subject.mesh | Stochastic Processes | en_HK |
dc.subject.mesh | Time Factors | en_HK |
dc.title | Robust filtering for stochastic genetic regulatory networks with time-varying delay | en_HK |
dc.type | Article | en_HK |
dc.identifier.openurl | http://library.hku.hk:4550/resserv?sid=HKU:IR&issn=0025-5564&volume=220&issue=2&spage=73&epage=80&date=2009&atitle=Robust+filtering+for+stochastic+genetic+regulatory+networks+with+time-varying+delay | en_HK |
dc.identifier.email | Lam, J:james.lam@hku.hk | en_HK |
dc.identifier.authority | Lam, J=rp00133 | en_HK |
dc.description.nature | postprint | - |
dc.identifier.doi | 10.1016/j.mbs.2009.04.002 | en_HK |
dc.identifier.pmid | 19393668 | - |
dc.identifier.scopus | eid_2-s2.0-67650682711 | en_HK |
dc.identifier.hkuros | 179591 | en_HK |
dc.relation.references | http://www.scopus.com/mlt/select.url?eid=2-s2.0-67650682711&selection=ref&src=s&origin=recordpage | en_HK |
dc.identifier.volume | 220 | en_HK |
dc.identifier.issue | 2 | en_HK |
dc.identifier.spage | 73 | en_HK |
dc.identifier.epage | 80 | en_HK |
dc.identifier.isi | WOS:000269046800001 | - |
dc.publisher.place | United States | en_HK |
dc.relation.project | Decay rate estimation and synthesis of functional differential systems via semi-definite programming | - |
dc.identifier.scopusauthorid | Wei, G=8365213900 | en_HK |
dc.identifier.scopusauthorid | Wang, Z=35231712300 | en_HK |
dc.identifier.scopusauthorid | Lam, J=7201973414 | en_HK |
dc.identifier.scopusauthorid | Fraser, K=8986916900 | en_HK |
dc.identifier.scopusauthorid | Rao, GP=7403993176 | en_HK |
dc.identifier.scopusauthorid | Liu, X=35290922200 | en_HK |
dc.identifier.citeulike | 5334929 | - |
dc.identifier.issnl | 0025-5564 | - |