Dataset

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Title of Dataset
Data from: From peer-reviewed to peer-reproduced in scholarly publishing: The complementary roles of data models and workflows in bioinformatics
Author of Dataset
Gonzalez-Beltran, Alejandra1
Li, Peter2
Zhao, Jun3
Avila-Garcia, Maria Susana4
Roos, Marco5
Thompson, Mark5
van der Horst, Eelke5
Kaliyaperumal, Rajaram5
Luo, Ruibang6
Lee, Tin-Lap7
Lam, Tak-wah6
Edmunds, Scott C.2
Sansone, Susanna-Assunta1
Rocca-Serra, Philippe1
Contact
Sansone, Susanna-Assunta1
Rocca-Serra, Philippe1
Date of Dataset Creation
2015-06-09
Description
The SOAPdenovo2 case study is a reproducibility study aimed at exploring how existing research objects and workflow enactment engines can help assess, record and preserve scientific workflows and associated findings by reviewing a comparison between sequence assembly algorithm performance in the light of development of the SOAPdenovo2 de novo genome assembler. The case study was a joint effort by the GigaScience journal, the Investigation/Study/Assay (ISA) infrastructure, Nanopublication (Nanopub) and Research Object (RO) communities and SOAPdenovo2 de novo genome assembler developers. Included here are the relevant ISA-TAB, linkedISA, nanopubs and Research Object files. For more see the paper and GitHub page.
Citation
Gonzalez-Beltran, A, Li, P, Zhao, J, Avila-Garcia, MS, Roos, M, Thompson, M, van der Horst, E, Kaliyaperumal, R, Luo, R, Lee, TL, Lam, T, Edmunds, SC, Sansone, SA, Rocca-Serra, P. (2015). Data from: From peer-reviewed to peer-reproduced in scholarly publishing: The complementary roles of data models and workflows in bioinformatics. [Data File]. Access to Files at http://dx.doi.org/10.5281/zenodo.18403,Access to Files at http://dx.doi.org/10.5524/100148
Subject (RGC Codes)
E2 — Computing Science & Information Technology — 電腦科學及資訊科技
  • 2211 — Information Analytics — 資訊分析
Subject (ANZSRC)
08 — INFORMATION AND COMPUTING SCIENCES — 資訊與計算科學
  • 0803 — COMPUTER SOFTWARE — 電腦軟體
    • 080307 — Operating Systems — 作業系統
DOI for Dataset
http://dx.doi.org/10.5281/zenodo.18403http://dx.doi.org/10.5524/100148
Affiliations
  1. Univ Oxford, Oxford E Res Ctr, Oxford OX1 3QG, England
  2. GigaScience, BGI HK Res Inst, Hong Kong, Hong Kong, Peoples R China
  3. Univ Lancaster, InfoLab21, Lancaster LA1 4WA, England
  4. John Radcliffe Hosp, Nuffield Dept Med, Div Expt Med, Oxford OX3 9DU, England
  5. Leiden Univ, Med Ctr, Dept Human Genet, NL-2300 RC Leiden, Netherlands
  6. Univ Hong Kong, HKU BGI Bioinformat Algorithms & Core Technol Res, Hong Kong, Hong Kong, Peoples R China ; Univ Hong Kong, Dept Comp Sci, Hong Kong, Hong Kong, Peoples R China
  7. Chinese Univ Hong Kong, Sch Biomed Sci, Shatin, Hong Kong, Peoples R China ; Chinese Univ Hong Kong, CUHK BGI Innovat Inst Transom, Shatin, Hong Kong, Peoples R China