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Article: SNPP: Automating large-scale SNP genotype data management

TitleSNPP: Automating large-scale SNP genotype data management
Authors
Issue Date2005
PublisherOxford University Press. The Journal's web site is located at http://bioinformatics.oxfordjournals.org/
Citation
Bioinformatics, 2005, v. 21 n. 2, p. 266-268 How to Cite?
AbstractSummary: To manage high-throughput single nucleotide polymorphism (SNP) genotyping data efficiently, we developed a dynamic general database management system - SNPP (SNP Processor). It provides several functions, including data importing with comparison, Mendelian inheritance check within pedigrees, data compiling and exporting. Furthermore, SNPP may generate files for repeat genotyping and transform them into files that can be executed by a liquid handling system. © Oxford University Press 2004; all rights reserved.
Persistent Identifierhttp://hdl.handle.net/10722/181191
ISSN
2015 Impact Factor: 5.766
2015 SCImago Journal Rankings: 4.643
ISI Accession Number ID
References

 

DC FieldValueLanguage
dc.contributor.authorZhao, LJen_US
dc.contributor.authorLi, MXen_US
dc.contributor.authorGuo, YFen_US
dc.contributor.authorXu, FHen_US
dc.contributor.authorLi, JLen_US
dc.contributor.authorDeng, HWen_US
dc.date.accessioned2013-02-21T02:02:39Z-
dc.date.available2013-02-21T02:02:39Z-
dc.date.issued2005en_US
dc.identifier.citationBioinformatics, 2005, v. 21 n. 2, p. 266-268en_US
dc.identifier.issn1367-4803en_US
dc.identifier.urihttp://hdl.handle.net/10722/181191-
dc.description.abstractSummary: To manage high-throughput single nucleotide polymorphism (SNP) genotyping data efficiently, we developed a dynamic general database management system - SNPP (SNP Processor). It provides several functions, including data importing with comparison, Mendelian inheritance check within pedigrees, data compiling and exporting. Furthermore, SNPP may generate files for repeat genotyping and transform them into files that can be executed by a liquid handling system. © Oxford University Press 2004; all rights reserved.en_US
dc.languageengen_US
dc.publisherOxford University Press. The Journal's web site is located at http://bioinformatics.oxfordjournals.org/en_US
dc.relation.ispartofBioinformaticsen_US
dc.subject.meshAlgorithmsen_US
dc.subject.meshChromosome Mapping - Methodsen_US
dc.subject.meshDatabase Management Systemsen_US
dc.subject.meshDatabases, Nucleic Aciden_US
dc.subject.meshGenotypeen_US
dc.subject.meshInformation Storage And Retrieval - Methodsen_US
dc.subject.meshInterneten_US
dc.subject.meshLinkage Disequilibrium - Geneticsen_US
dc.subject.meshSequence Alignment - Methodsen_US
dc.subject.meshSequence Analysis, Dna - Methodsen_US
dc.subject.meshSoftwareen_US
dc.subject.meshUser-Computer Interfaceen_US
dc.titleSNPP: Automating large-scale SNP genotype data managementen_US
dc.typeArticleen_US
dc.identifier.emailLi, MX: mxli@hku.hken_US
dc.identifier.authorityLi, MX=rp01722en_US
dc.description.naturelink_to_subscribed_fulltexten_US
dc.identifier.doi10.1093/bioinformatics/bth486en_US
dc.identifier.pmid15377503-
dc.identifier.scopuseid_2-s2.0-13444251527en_US
dc.relation.referenceshttp://www.scopus.com/mlt/select.url?eid=2-s2.0-13444251527&selection=ref&src=s&origin=recordpageen_US
dc.identifier.volume21en_US
dc.identifier.issue2en_US
dc.identifier.spage266en_US
dc.identifier.epage268en_US
dc.identifier.isiWOS:000226308500017-
dc.publisher.placeUnited Kingdomen_US
dc.identifier.scopusauthoridZhao, LJ=7404455505en_US
dc.identifier.scopusauthoridLi, MX=17135391100en_US
dc.identifier.scopusauthoridGuo, YF=15757348500en_US
dc.identifier.scopusauthoridXu, FH=7401695313en_US
dc.identifier.scopusauthoridLi, JL=7410075530en_US
dc.identifier.scopusauthoridDeng, HW=7401775190en_US

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