Dataset

   File(s) held in another repository
Title of Dataset
Data from: Hand, Foot, and Mouth Disease in China: Modeling Epidemic Dynamics of Enterovirus Serotypes and Implications for Vaccination
Author of Dataset
Takahashi, Saki1
Liao, Qiaohong2
Van Boeckel, Thomas P.1
Xing, Weijia2
Sun, Junling2
Hsiao, Victor Y.1
Metcalf, C. Jessica E.3
Chang, Zhaorui2
Liu, Fengfeng2
Zhang, Jing2
Farrar, Jeremy J.5
van Doorn, H. Rogier6
Grenfell, Bryan T.7
Yu, Hongjie2
Contact
Grenfell, Bryan T.7
Yu, Hongjie2
Date of Dataset Creation
2016-02-16
Description
Background Hand, foot, and mouth disease (HFMD) is a common childhood illness caused by serotypes of the Enterovirus A species in the genus Enterovirus of the Picornaviridae family. The disease has had a substantial burden throughout East and Southeast Asia over the past 15 y. China reported 9 million cases of HFMD between 2008 and 2013, with the two serotypes Enterovirus A71 (EV-A71) and Coxsackievirus A16 (CV-A16) being responsible for the majority of these cases. Three recent phase 3 clinical trials showed that inactivated monovalent EV-A71 vaccines manufactured in China were highly efficacious against HFMD associated with EV-A71, but offered no protection against HFMD caused by CV-A16. To better inform vaccination policy, we used mathematical models to evaluate the effect of prospective vaccination against EV-A71-associated HFMD and the potential risk of serotype replacement by CV-A16. We also extended the model to address the co-circulation, and implications for vaccination, of additional non-EV-A71, non-CV-A16 serotypes of enterovirus. Methods and Findings Weekly reports of HFMD incidence from 31 provinces in Mainland China from 1 January 2009 to 31 December 2013 were used to fit multi-serotype time series susceptible–infected–recovered (TSIR) epidemic models. We obtained good model fit for the two-serotype TSIR with cross-protection, capturing the seasonality and geographic heterogeneity of province-level transmission, with strong correlation between the observed and simulated epidemic series. The national estimate of the basic reproduction number, R0, weighted by provincial population size, was 26.63 for EV-A71 (interquartile range [IQR]: 23.14, 30.40) and 27.13 for CV-A16 (IQR: 23.15, 31.34), with considerable variation between provinces (however, predictions about the overall impact of vaccination were robust to this variation). EV-A71 incidence was projected to decrease monotonically with higher coverage rates of EV-A71 vaccination. Across provinces, CV-A16 incidence in the post-EV-A71-vaccination period remained either comparable to or only slightly increased from levels prior to vaccination. The duration and strength of cross-protection following infection with EV-A71 or CV-A16 was estimated to be 9.95 wk (95% confidence interval [CI]: 3.31, 23.40) in 68% of the population (95% CI: 37%, 96%). Our predictions are limited by the necessarily short and under-sampled time series and the possible circulation of unidentified serotypes, but, nonetheless, sensitivity analyses indicate that our results are robust in predicting that the vaccine should drastically reduce incidence of EV-A71 without a substantial competitive release of CV-A16. Conclusions The ability of our models to capture the observed epidemic cycles suggests that herd immunity is driving the epidemic dynamics caused by the multiple serotypes of enterovirus. Our results predict that the EV-A71 and CV-A16 serotypes provide a temporary immunizing effect against each other. Achieving high coverage rates of EV-A71 vaccination would be necessary to eliminate the ongoing transmission of EV-A71, but serotype replacement by CV-A16 following EV-A71 vaccination is likely to be transient and minor compared to the corresponding reduction in the burden of EV-A71-associated HFMD. Therefore, a mass EV-A71 vaccination program of infants and young children should provide significant benefits in terms of a reduction in overall HFMD burden.
Citation
Takahashi, S, Liao, Q, Van Boeckel, TP, Xing, W, Sun, J, Hsiao, VY, Metcalf, CJE, Chang, Z, Liu, F, Zhang, J, Wu, JT, Cowling, BJ, Leung, GM, Farrar, JJ, van Doorn, HR, Grenfell, BT, Yu, H. (2016). Data from: Hand, Foot, and Mouth Disease in China: Modeling Epidemic Dynamics of Enterovirus Serotypes and Implications for Vaccination. [Data File]. All relevant data are within the paper and its Supporting Information files. Click on “Linked Publications” to access the publication and access supporting information on figshare at https://figshare.com/articles/Hand_Foot_and_Mouth_Disease_in_China_Modeling_Epidemic_Dynamics_of_Enterovirus_Serotypes_and_Implications_for_Vaccination/2342560
Subject (RGC Codes)
M2 — Medicine, Dentistry & Health — 醫學, 牙科學及保健
  • 1211 — Epidemiology — 流行病學
Subject (ANZSRC)
11 — MEDICAL AND HEALTH SCIENCES — 醫學與衛生科學
  • 1114 — PAEDIATRICS AND REPRODUCTIVE MEDICINE — 小兒科與生殖醫學
    • 111403 — Paediatrics — 小兒科
Keyword
Enteroviru
1 January 2009
31 December 2013
coverage rates
epidemic
TSIR
Modeling Epidemic Dynamics
vaccination
HFMD
CI
IQR
serotype replacement
incidence
model
Affiliations
  1. Princeton Univ, Dept Ecol & Evolutionary Biol, Princeton, NJ 08544 USA
  2. Chinese Ctr Dis Control & Prevent, Div Infect Dis, Key Lab Surveillance & Early Warning Infect Dis, Beijing, Peoples R China
  3. Princeton Univ, Dept Ecol & Evolutionary Biol, Princeton, NJ 08544 USA ; Princeton Univ, Woodrow Wilson Sch Publ & Int Affairs, Princeton, NJ 08544 USA
  4. Univ Hong Kong, Li Ka Shing Fac Med, WHO Collaborating Ctr Infect Dis Epidemiol & Cont, Sch Publ Hlth, Hong Kong, Hong Kong, Peoples R China
  5. Univ Oxford, Clin Res Unit, Hosp Trop Dis, Ho Chi Minh City, Vietnam
  6. Univ Oxford, Clin Res Unit, Hosp Trop Dis, Ho Chi Minh City, Vietnam ; Univ Oxford, Nuffield Dept Med, Ctr Trop Med, Oxford, England
  7. Princeton Univ, Dept Ecol & Evolutionary Biol, Princeton, NJ 08544 USA ; NIH, Fogarty Int Ctr, Bldg 10, Bethesda, MD 20892 USA